RnoEX6054266 @ rn6
Exon Skipping
Gene
ENSRNOG00000018378 | Cacnb2
Description
calcium voltage-gated channel auxiliary subunit beta 2 [Source:RGD Symbol;Acc:67385]
Coordinates
chr17:81999502-82003698:+
Coord C1 exon
chr17:81999502-81999635
Coord A exon
chr17:82003122-82003202
Coord C2 exon
chr17:82003640-82003698
Length
81 bp
Sequences
Splice sites
3' ss Seq
AATGTCTCATTTCTCTGCAGACA
3' ss Score
10.27
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTATAGACATAGATGCTACTGGCTTAGATGCAGAAGAGAATGATATTCCAGCAAACCACCGCTCCCCTAAGCCCAGTGCAAACAGTGTAACGTCACCCCACTCCAAAGAGAAAAGAATGCCCTTCTTTAAGAAG
Seq A exon
ACAGAGCACACTCCTCCTTACGATGTGGTACCATCCATGAGACCAGTGGTGTTGGTGGGCCCCTCCCTGAAGGGGTATGAG
Seq C2 exon
GTCACAGATATGATGCAAAAAGCACTGTTTGATTTTCTAAAACACAGATTTGAAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018378-'19-18,'19-17,21-18=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.370 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062516=Guanylate_kin=PU(20.0=55.6)
C2:
PF0062516=Guanylate_kin=FE(10.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTACTGGCTTAGATGCAGA
R:
CGTCCTTCAAATCTGTGTTTTAGA
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]