DreEX0018224 @ danRer10
Exon Skipping
Gene
ENSDARG00000099045 | cacnb2a
Description
calcium channel, voltage-dependent, beta 2a [Source:ZFIN;Acc:ZDB-GENE-080808-7]
Coordinates
chr7:71617579-71622784:-
Coord C1 exon
chr7:71622765-71622784
Coord A exon
chr7:71620194-71620274
Coord C2 exon
chr7:71617579-71617637
Length
81 bp
Sequences
Splice sites
3' ss Seq
GTTTGTGTGCCGCTGTACAGACG
3' ss Score
5.16
5' ss Seq
GAGGTGCTG
5' ss Score
2.64
Exon sequences
Seq C1 exon
CTAAGCAGTGGCAGAAGTCG
Seq A exon
ACGGAGCATGCTCCTCCATATGATGTGGTGCCGTCGATGAGGCCGGTTGTTCTCGTTGGACCTTCACTCAAGGGCTACGAG
Seq C2 exon
GTAACAGATATGATGCAGAAAGCGCTGTTTGACTTTCTGAAGCACCGGTTTGAGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099045_MULTIEX1-4/4=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.771 A=0.186 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062516=Guanylate_kin=PU(8.3=55.6)
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAGCAGTGGCAGAAGTCG
R:
CTCCCCTCAAACCGGTGCTT
Band lengths:
79-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]