DreEX0018223 @ danRer10
Exon Skipping
Gene
ENSDARG00000099045 | cacnb2a
Description
calcium channel, voltage-dependent, beta 2a [Source:ZFIN;Acc:ZDB-GENE-080808-7]
Coordinates
chr7:71620194-71625335:-
Coord C1 exon
chr7:71625259-71625335
Coord A exon
chr7:71622995-71623128
Coord C2 exon
chr7:71620194-71620274
Length
134 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGTAGCTG
3' ss Score
8.3
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
TAAATCAGGGGCAAACTCTTCATCCAGTTTAGGGGACATTGTTTCAAACTCACGGAAATCAACTCCTCCCTCCTCAG
Seq A exon
CTGTGGACATTGACGCCGCAGGTTTAGATGCAGAGGAGAGCGATCCTCCTCCCCATCAGCGATCTCCCAAAGCCAGCCCAAACACAGTCATATCCCCTTTAGCCCGAGAGAAACGAATGCCTTTCTTTAAGAAG
Seq C2 exon
ACGGAGCATGCTCCTCCATATGATGTGGTGCCGTCGATGAGGCCGGTTGTTCTCGTTGGACCTTCACTCAAGGGCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099045_MULTIEX1-2/4=C1-4
Average complexity
ME(2-3[100=99])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.764 A=0.813 C2=0.186
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGGGCAAACTCTTCATCC
R:
CTCGTAGCCCTTGAGTGAAG
Band lengths:
154-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]