RnoEX0016177 @ rn6
Exon Skipping
Gene
ENSRNOG00000018378 | Cacnb2
Description
calcium voltage-gated channel auxiliary subunit beta 2 [Source:RGD Symbol;Acc:67385]
Coordinates
chr17:81995425-82003202:+
Coord C1 exon
chr17:81995425-81995501
Coord A exon
chr17:81999502-81999635
Coord C2 exon
chr17:82003122-82003202
Length
134 bp
Sequences
Splice sites
3' ss Seq
AATTGTTTGTCTGTATATAGCTA
3' ss Score
6.11
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
TAAATCAGGAGGAAATTCATCATCCAGTTTGGGTGACATAGTACCCAGTTCCAGAAAATCGACACCTCCATCATCTG
Seq A exon
CTATAGACATAGATGCTACTGGCTTAGATGCAGAAGAGAATGATATTCCAGCAAACCACCGCTCCCCTAAGCCCAGTGCAAACAGTGTAACGTCACCCCACTCCAAAGAGAAAAGAATGCCCTTCTTTAAGAAG
Seq C2 exon
ACAGAGCACACTCCTCCTTACGATGTGGTACCATCCATGAGACCAGTGGTGTTGGTGGGCCCCTCCCTGAAGGGGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018378_MULTIEX1-2/3=C1-C2
Average complexity
ME(2-3[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.852 A=1.000 C2=0.370
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(20.0=55.6)
Main Skipping Isoform:
ENSRNOT00000031542fB2245
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAATTCATCATCCAGTTTGGG
R:
GGCCCACCAACACCACTG
Band lengths:
130-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]