BtaEX0006809 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022000 | CACNB2
Description
Bos taurus calcium channel, voltage-dependent, beta 2 subunit (CACNB2), mRNA. [Source:RefSeq mRNA;Acc:NM_175789]
Coordinates
chr13:33158562-33257774:+
Coord C1 exon
chr13:33158562-33158681
Coord A exon
chr13:33253868-33254001
Coord C2 exon
chr13:33257694-33257774
Length
134 bp
Sequences
Splice sites
3' ss Seq
AATTGTTTGTCTGTATATAGCTA
3' ss Score
6.11
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GGTTCGGCAGACTCCTACACCAGCCGTCCATCCGATTCAGATGTTTCTTTGGAGGAAGATCGGGAGGCAGTGCGCAGAGAAGCAGAGCGACAGGCCCAGGCCCAGCTGGAAAAAGCAAAG
Seq A exon
CTATAGACATAGATGCTACTGGCTTAGATGCAGAAGACAATGATATTCCAGCAAACCACCGCTCCCCTAAACCCAGTGCAAACAGTGTAACGTCACCCCACTCCAAAGAGAAAAGAATGCCCTTCTTTAAGAAG
Seq C2 exon
ACAGAGCACACCCCTCCGTATGATGTGGTCCCTTCTATGCGACCTGTGGTCCTGGTGGGCCCCTCTCTGAAGGGGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022000_MULTIEX1-4/7=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=1.000 C2=0.175
Domain overlap (PFAM):
C1:
PF120523=VGCC_beta4Aa_N=PU(92.9=97.5)
A:
NO
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGGCAGACTCCTACACCAG
R:
CATACCCCTTCAGAGAGGGGC
Band lengths:
197-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development