BtaEX0006805 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022000 | CACNB2
Description
Bos taurus calcium channel, voltage-dependent, beta 2 subunit (CACNB2), mRNA. [Source:RefSeq mRNA;Acc:NM_175789]
Coordinates
chr13:33254147-33257774:+
Coord C1 exon
chr13:33254147-33254166
Coord A exon
chr13:33254633-33254693
Coord C2 exon
chr13:33257694-33257774
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTAAACTTCTAATCCACTAGGTG
3' ss Score
7.58
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
CTAAGCAGAAGCAGAAATCG
Seq A exon
GTGCAAAATCTGCAGATGAACAAGACCAGTGGAAACTGCAGGCTTGTTTTGGCGGTCTACT
Seq C2 exon
ACAGAGCACACCCCTCCGTATGATGTGGTCCCTTCTATGCGACCTGTGGTCCTGGTGGGCCCCTCTCTGAAGGGGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022000-'13-10,'13-9,14-10
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=0.190 C2=0.175
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Main Inclusion Isoform:
ENSBTAT00000029344fB1285
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development