BtaINT0030545 @ bosTau6
Intron Retention
Gene
ENSBTAG00000022000 | CACNB2
Description
Bos taurus calcium channel, voltage-dependent, beta 2 subunit (CACNB2), mRNA. [Source:RefSeq mRNA;Acc:NM_175789]
Coordinates
chr13:33253868-33257774:+
Coord C1 exon
chr13:33253868-33254001
Coord A exon
chr13:33254002-33257693
Coord C2 exon
chr13:33257694-33257774
Length
3692 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
GGCGTCTCCTCTCTCTGCAGACA
3' ss Score
11.05
Exon sequences
Seq C1 exon
CTATAGACATAGATGCTACTGGCTTAGATGCAGAAGACAATGATATTCCAGCAAACCACCGCTCCCCTAAACCCAGTGCAAACAGTGTAACGTCACCCCACTCCAAAGAGAAAAGAATGCCCTTCTTTAAGAAG
Seq A exon
GTAACATGAACTTCCAAGCTTGCGTCTGTCCACGCGCTCAACTGCACTGCGTCACATTTCTAGTCCTGTGGACTGTCTGCGTCCTTGATAAAGCCAATAACATGCATGCTTTGTTATTCTTTGTTTCTTTTCCATGCTGCTGTAGCTAAGCAGAAGCAGAAATCGGTAAGTTCACATTGACATAAGCTGTGTTTATCCTGCCCCTGGCATCATTAGCATTCAGTCCCACAGTTAATATTCAACACGATCATTTCTGTCCTAAGAAAAGAATGTATCAAGCAGCTAATTGAGTCCATTCAGACCAGCTAAATTCAGTGAGTGACCTGTGGAAGCACCATTACAGTACCTAGCCTTTTTGATGGAATAACAGCTACCACCAAGGGCATTCGTTCCAACATTCTAGGAACGTCCAATGCTGAAGACTCCATTTGTAATGCACCTCTCTCGTGCATGCTTCTGTCTCTATCACTTTCTTTCCTCCAGAAATTTAACTGATAATCAAGCATATGAAAAACCATTATTAGATTCTGATTTATGATATCCAGATACATAGCTTGTACTAAAAAAAAAATTTTTTTTTCAATTCTTCAATTTTTAATTTAGTCAGTTATTTAAACTTCTAATCCACTAGGTGCAAAATCTGCAGATGAACAAGACCAGTGGAAACTGCAGGCTTGTTTTGGCGGTCTACTGTGAGTTCTTCCTATTGTCATATATAAATCCTCTCCCCATGTTCTTGCCTCCTCCGTCACTCAGATCTCAGCATCCCACCCATCGGACGGTGACACGGTGGCTGTGCGTAGAGCCTTTGCCACTGGCCAACCAAGATGCTACCCAGTGATCCTCTTGGTTCCCTGACTGCAAACTAGGGTACTGCTGAGCTCTCTTGACTCCAAAATCTGTTTCTTCCAAGCACATTTTGTAGCTCTGAAGCATTATTTTTTGAGGATAATCTCCCCGTCCACAATCCCCACTCCTTTCTTTCTTTTATATACCACTGTCCACCGCCTGTTGTGCTGTGCTGTCTTTAGAGTCATTCTTTCTAATGTCAGCAAGTCCAGCACAACCTCTCACGACATACGTGGGCATGGAGTCGAACCTCCTCTGCCTCCAGCTCTCCACACCCTGAGCCCTTCTCTTCTGTACAGTAGGATTCTGCCCTGTGGAGGAACTGAGTCATCAATGAGGTGTCAGATGCTGAACTATGTTTTGTTTTGTTTTGTTTTAAAAAATAAATTGTGTTTGCTTTCATTGTGGAAGACCGAGATACTCCAAGCAAAAATTAAAACCCCTGGATTTTTGTGTGACCACCGAAAGCCACAGCCAACTATCCATCCACGACAGTGGGTCCATTTCTCTGGTCCTTTCTTCTTGTCACCGCTAAAACTTAGAGCCAGGTGACTTGACAGGGTTCAGAGCAGCAGAAACCTAAAAATTCAGCATTGCTCAGCTGCTCCGAGCTTTACCCAACAGGAACATGAATGAAAACCGTGTTTATTGATAGGTTTTTCTGAAGTTTGCGGACTCCTAAATTCCAAAACATGAAAAATGTTTATTGTAATTCTTCCACTAAATAATTTGAACAAATTACACTTAGCAGGAGAGGACAGATAAAAAAGGATGGTGTCCTGATTCATAGGGTATAAAGTTCCAATATTCCATCAAATAAGGTAATTTCTGTAGCTACCCTACTGATGAAGAAGCTGATTGATTAGCAGCATTGCTATTAATAGTTGGCAGTCACAAATCAAAGGAACCCAAGACCCATCTAATACTGGGCCACTGAATATTTAAAGACTTGAAATAAAATTTCTTGGAAGCTAAAATGCATGCAACTGATATTCCTAATTATAATGATGGAAAAGGTATTCTTAGACCGCATAGTTATAAGGACTTGGCTTCTAAATATTTTCAATCTGATCCCAGGTGGTATAAATGCAATAACTGAATAATTTTGCTGAATTAATTTCATGTCATAATCTCATGAATATGCTTATGATGCCTTCGGCACAGGTATTCATTCTTCTTATGTTGTTAATGATGTGGTCAGCTTCAATATAGACTTTTCAAAACCAAAAAAAAAAAAACAACCTGAGATGCAGTAAGACTGTTTTCCATGTTTTAGGTTGCTTTTAGAGTGATGCTTGTGTGGCCTTTGTGCTGTCACTGTATTATGTTTGTCTTGGGTTTGTTGGTTGGTTGGTTTTTTTTCTGTTTAAAAATGTATTCTACCTTGATTGTATCTATTAAAATTCATTTTGAGCACTAGATAAAGCTTTCAGCAGTAAAATTTGAGACAGCACAGTCACAGTCATATCTTCTCCCCTCCGATTCTATCGTCCATGACTATGGGCAAAACTCCAATGGAAACTTTTGAATTTGAAATGCTTTTTCATCCCCTCGCCATGCCCCAAGCAAAGTAAATTCGATCCAAGTCAGAAAGTTGGTAAAGGGCCATCTTAAGCAACAGTAATGTGTTCTTGAACGACAGCCTGATGCAAAAATGGCATTCACGCTTACAATAAGTTGACAAAATTCTTCCAGTAGTTCAGAGAAGATTTTTCTTTTGGTCTGGGTGATTCTTAACATATATGTATTTTTCAGACACTTAGTGCAGGAAGACTCCTGCCAGCATGATTTGTTTATCTGTGTCTTAGGCCATAGTTGTCTTCTACATTAAAGAAGTCATTTTTTTCCCCAGTCACTTTAACATTTTCTTCTATTAAAATAGCCAATTTTAAGATCTTTAAAAAAATAAGTTATCTAATTTGGGGGAAAATCTTTTTTGTCATTATTGTATTAGAAGCAGAAGAGCTGAAAATTGTTGCAAGTTTTAGAAATGGCTACAAAGTTAGGTCCTCCCCCTGCTCTTCTAAAAAAGAAAGAAATTCTTGTGGGAGGGAATGAGTTAGTTATGTAAGGGAAACACCTCCTAACCAGTTCTTGAGAAGCACATGAGAACTGCAGGAGGACAGTGAGCCTTGTGAGGCCATGGAGGCCTGCTCGGGCATTTTAACGCATCAGAAGCAGCTTCCCTCCAAGACCCATAAACCTGACATTATAAGTGTTTAAGTTCCAAAGGATAGAAACCAAAAATCTAAACATATAAATCCATCAGCTGTGAAGAGTGATCATGATTCCATTTACTGAAACAAGCATGCAGGCTCCTCCAAACTCTCACAGCAAAACAGAAACTGTCGAGTATTTGGTCACAAAAGACCAAGGTTTTATCCAGGTAAGACCAACATCTAAGACCCAAAGACCTTTCTTTCCTTTGTCATTAACCACATGAGGTCTGATCATTCCACTCTTGAGAAAACTCAAATGCATCTGAAAAGCAGTATTAACCTCCGGTCAAGCTTTTAAAAGCACCTCTCCTGCATGAGGCATGTTTTTGTCTGTTCTAACTAGTTTTTTTGTTCAAAAGCAGCCCCTCCTGCATTAGGAACATCAGGAGCATTTGAGGAGAGCCAGAAAACTGTAGACAACTCAGTCACTTTGAAACATGAAGGAAATAAAACCACCCAGTCTTGGGTTGGGTTTATTTAGAAAAAGAAGCCAGTGCAAAAAGAATGGCAGTGTCTGGGAAGTTAGTGCCTGGTATCACAGAGTTGAGAAAGAACAGTTTGTGCCTTATATATTTGAGTTCCCTCTGCCTTTTAACCATCTGAAGGCGTCTCCTCTCTCTGCAG
Seq C2 exon
ACAGAGCACACCCCTCCGTATGATGTGGTCCCTTCTATGCGACCTGTGGTCCTGGTGGGCCCCTCTCTGAAGGGGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022000:ENSBTAT00000029344:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.175
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development