GgaINT0097891 @ galGal4
Intron Retention
Gene
ENSGALG00000008591 | CACNB2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:HGNC Symbol;Acc:HGNC:1402]
Coordinates
chr2:19022469-19025427:-
Coord C1 exon
chr2:19025294-19025427
Coord A exon
chr2:19022550-19025293
Coord C2 exon
chr2:19022469-19022549
Length
2744 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
AATCTTTTTCTGTTTTACAGACA
3' ss Score
9.58
Exon sequences
Seq C1 exon
CTATAGACATAGATGCCACTGGCTTAGATGCAGAAGAAAATGATATTCCAGCAAACCATCGCTCCCCCAAACCCAGTGCAAACAGTGTAACATCACCCCACTCCAAAGAGAAAAGAATGCCCTTCTTTAAGAAG
Seq A exon
GTAACACCGACTTCCAAGCTCCCATTTGTCCACCTGCTCACCTGCACTGCGTCGCATTTCTAGTCCTGTTAACTGTCTGCGTCCTTTGACAAGCCAATAACATGCATGCTTTGTTGTTCTTTGTTTCTTTTCCATGCTGCTGTAGCTAAGCAGAAGCAGAAATCGGTAAGTTTATATTGGCACTACCTGTGTTCATCCTGCTGCTGGCATCATTATGATTATTGCCTCAGTTTAACAATGCTGCTATGCTAGAATTAAAGAAGAGATTAATTGAACTGTCCAAGTACTCAAAACACTAAAACAAACATCAGTAAGCTCAGGGTGTCCATGAAACTCTGCTACAGTATTTATCCTTTTTGATGGAATAAGTAAGACAGAAGGCCTTCTAAATGTCTGAGGAATTTTTTTCTAACAAATTCATATAACACACCTCTCTAGTGCATGCCCGTTCTTTATATCTCTGTCTTTTTCAAGGTATTATTTTCATTGTAACTCAGTCTATTGAAATCACTATTGGAGTCTAATCAGATACTCAGACAGTAGTTACAAAACAAAGAATCAAAATCTGTGAATTTCTAATTTAGTCAATATTTAAACTTTTAATTCACTTGGTGCAAAATCTACAGATGAGAAAAAACAGGGGAAAAGTACAGGCTTGTTTTGGCAGTCTAGTTTTTCCTATTGTCATGTATAAATTGCCAGCCAAATGTTCTTGCTTTACATCAGTCAAATGATTTTGTATCTCAGCTATTGTAAATCATACCATTAGTTTCCATAAGAGCCAATGTCTTTACATAGATAACCCTAAGTGCTGCAGAATTATACCACTGGCATCCTATTACAGCAAACTGTGATATGTTTCTAAGATATCTGGTAAAAAACATTATCAAGACACTAGGTAGCAGCCAAACTATGAAACTAAATACTATGCTTCTCCTTAAAAAGAATAAAATAAATCTTCAAAGTCTCCATAGCCATTCTTCATTTACTTTTAACTACTCAACATCTTCAGGTAATAACAGGCTATATATGCTGCTATATAGACTCCTGCTGAAAGCTTTGTTAAAAATAAAACTGTTTCAGCAGTTTTTCAGTAAACTCTATATTCCATCAAATAAGGTAACTTCTGTACATTCCCTGATTTTCAAATAGCCAGTTAACTTCTAGCATGCATAACTGAGTTGGCACATTAAAACAAAGATCTGTTGCATCAGTGCACTTTTGCTATAAACAAACATTAGTAATGGATTTTTATTAGGAGCTGACTCCAACAAATGTATCAGATTATTAGTGATATTAGCAAGAACAGCAGAGGGCTGCATTTTAATACTGGTGCAGCATAATTGCAGAGTTTTGCTTTGAAATGTGTTGAGTTAGATTCTGCCCTGTGTAACATGAGTTCATCTGATATGCATATGATGCCTTGGGCACTGCTATTCATTAATATTTACTGATTATCTGGTGAAGCTCCAGGTAACCAAAAGCAAGATAAATTATATTTAGAATATAAAAACATTCATGAAAATGTTTTCTGTGTTTTAGACAGCTTTAGACTGCTGCTTGTTTAGCATTGTGTGCTGTCACTGTATTAATGTTTGTCTATGTTTTTCTATTTTGTAACGTATATTCTTATTTTAACTTTATTGTGAAACATCTTGGGATATGTTGAGTACTGAAGCAATGAACAATGACTGTATTCTACAGTCTCTACTGATGTATTTTTACTGCATAGGCATCTGAAAAATAGGCATACCATCTTTCTGTATCACCTACAAGTTCCTGGGTTTGGATTAGAAATGTTTTTCCCTAAGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCCCTTCCTCATAAGTCAATGTATGTCACTCTTGGAGGTATATATTGATTAGCCATTTATTAAAGAAAATAAAACAGATTAATCTGCTTATTTGTTATTTCAGTAGCAATATAAAAATTGTGGCAGTCTTTGGAAACAAGCAGTATTACTATTTTTCTTTTTCAAAATAGTTTTTTGTAAATTATGCATGATACGTCAGTAAGTACTTTGGTGAATATTGTTCTAACACACGCTGCTCTTGGGTGGTGATGGGCACTTCCCAGAGTAGAAATTTTGGTATCCCAAGCTCTGTTTATGAAAATTTTCTGTGAATACTAACTTGATCAGTAATTGTTTTGATTTCTTTTGGAAGTGAATTGTGTATGCCAGCATGGAAGTCAGACTATGAGCACTTCCATTAGAATTTGCAGTGATGTCACATTTTGCAAATCAGACAGCAGATCTGAGCATAAAATGAGAAGTTCTAGGCTTCTCCCCTTCCTTTTTGTTTTACTTTTTTTCCTTTGTAGGTTGCCAAAGTAAATTTTTAGTAGGAATAAAGATGTCACATCTCCAGAGACAATTGTGTCAAGTCATTAACTATTGGAATTAACCTTTTCAATCAACCAGTCATGAATTAGGCGGTGGCACATGTGAATGTCTCTAGACTAACAGTTTTAGAACTGCTCAGCGCAAACATGAAAGTAGTAAGAAAACAGTAAGTCAAAGAAAAGCTTCTTCAAAAAGAAATCCATGAACCTGTGAAGTCCTTGTGGTACCAATTTTCAGGAAAAGTTAATTAATCCTCAATTCTTCTGTTGGTGACATCACTGGAAATTCAGAGTTGCTAATATTGTAAGTCGTATTAGACTCTAAGTGCTGCAGTGCTGAAATCTTTTTCTGTTTTACAG
Seq C2 exon
ACAGAGCACATCCCTCCCTATGATGTAGTGCCTTCTATGAGACCTGTAGTTTTAGTGGGACCTTCTTTGAAGGGATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008591:ENSGALT00000013988:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=NA C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062516=Guanylate_kin=PU(40.5=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]