MmuINT0027913 @ mm9
Intron Retention
Gene
ENSMUSG00000057914 | Cacnb2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:MGI Symbol;Acc:MGI:894644]
Coordinates
chr2:14889569-14893269:+
Coord C1 exon
chr2:14889569-14889702
Coord A exon
chr2:14889703-14893188
Coord C2 exon
chr2:14893189-14893269
Length
3486 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
ACTGTCTCATTTCTCTGCAGACA
3' ss Score
11.23
Exon sequences
Seq C1 exon
CTATAGACATAGATGCTACTGGCTTAGATGCAGAAGAGAATGATATTCCAGCAAACCACCGCTCCCCTAAGCCCAGTGCAAACAGTGTAACATCACCCCACTCCAAAGAGAAAAGAATGCCCTTCTTTAAGAAG
Seq A exon
GTAACCCCAACTTCCCAGCTCCTGTTGTTCACTTGCTCCGCCGCACTGCGTCACACTTCTGGTCCTGTTATGTCTGCGTCCTTTGACAAGTCAATAACATGCATGCTCTGTTATTCTTTGTTTCTTTTCCATGCTGCTGTAGCAAAGCAGAAGCAGAAGTCGGTAAGTTGACATTGACATGCCCGTGTTTCTCCTGCCAACGGCATCATTAGCATCAATCCACTTGGTTTTATTAAGTGCAGTCTTCCTGGCCCTAAGACAGTCCATCAATAGCTAACTGAATCCATGTATCTCACAGCAACTAAATGCAGTGGGTGACCTGTTGAAATGCCATTACAATAATTATCCTTTTTGATGGAATGATACATGCTACCAAGAGACTTTGATTAAATACTCAAGGATGTCCAGGCCTGGCTGGCTGACCAGCACACCTCAGTTGTACATGTGTACATATTTTTATTGTCTGCCTTTCTTTTTTCCGGAAACATAAATTATAATCAAGCACATTAAAGCAGTTACGGGATACTTCTTTATGATATCCAGTTACATTGCTTATGCTTTTAAAAAAAGAGGTCATTCAATTTTTAATTCAGTCAGTATTTAAGCTTCTAATCCATTAGGTGCAAAATCTGCAGATGAACAAGACCAGTGGAAAACTGCAGGCTTGTTTGGCGGTTTACTGTGAGTTTTTCCTGTCATCATGTATAAACACTCTCCCAGTGTTCTTGCCTTATCCATCAGTCAGATGGCAGCTTCACACCTATCAGACAATGGGGCTGCTGGTCACATGAAGAGCCTTTGCCATTGGTCAGTCAGGATGCCACATACCACTGCTGTAGCCTGAGCAGAAGGTCCAGGGAAATCCCAAGTTTTCTCTCAGTGTGTTTCATTGTTTAATAACAGTATATTTTAAGTATTGCCCTCCATTTCCATTTTTTTCTTCTCCTTTGACCCAGTACCTTCCATCTTCCACATCCACTATGCTTTAGACTCACAATCCCTAATGTTAACATGCATTGCACAAGAATGGATATTTTTAAACTTATATATAAAGTAATATCTATCCTGCCCTAGACTTTCAGCAAATTACCTTCACACACACACACACACACACACACACACACACACACACACACACACACATACACACACATACACACAGAGAGAGAGAAAGAGAGAGAGAGCGCTGTATTGCTTTGTAAAGTTTAACAATACATTGCCTTACTTGGAAGAATAAGCTTTTTTTATTTCTTTTTAAATAATCATTAAAGAGAGAACTCCAGGCACAATTTTAAACACCTGAACTTTTGTGTTGATGCAGAAACCCCTAGCATGATGATCTTCCACAAGAGTGGGCCACTTCTCTGGCCCAGCCTTGTCATCACAACTGAAGCTTGCAGCTAGGTAACCACAGGTGCGCACATTGCAGATGTTTCTTAGAAAGTCAACAGTGCTCAGCCACTCCGGACCTCACCAAGGAACAACATCAAGCTGATCATGTTCATCAGAGAGTATTTTGCAGTTTACTATCCTGCAAATTGGAAAACATGAAACAGGTTTATCCTAACGTTTCCACTAAGGAATTCAAACAAAAATGGCTTAGATAAAAAGGACAGATAAAAAATGTCATTAATAATACAGCACAAAGTATCAATATTCCATCAAATAAGGTAATTTCCCTTGTTAACCCTGCTGACAGAGAAGCTGCCTGATGGTCAGCATGGCTTACCCTTTGCTGGTGGCTATCACAGACTAAAGTAATTAAAGTCCTATCTTTTCTTAATAGTTATTGCAATTTATAATCCTATACTTAATGATAAAAGGGTGAAGGAGTCTTACTGTAGTATCAAAGGATATATATATATATATGACTTCTAGGTATTTTCAGTACAAACTCAAGTGATATGATATGTAATCACTTAACAAATATGCATATGATGCCTGCGGCACAGTTGCTCATTCTTCTTGTGTTCCTTACTCTGTGATAACGTAGAATGCAGAACAAGAGAGTAGGCTGTGTGTGAGTCCACGCCAGCTGTCTTCTGTGTTCTAGGTTGCTCTTAGGGTGCTGCTTGTCTGCTTGTCTGGCTTTTGTGATGTTACTGTACTGTGTTTGTCTTGGTTTTTTATTTCACTCAAATATGCATTTTACCTTTATTATGTCTATTAAAGGGAAGTTTTGAGTGCTAGGGAAAATGTTGAGCAGTAAAAGGTGAATAGCCCTTTCACAGTAATATATTTTTTCTTTTGATTATATGGTCTACAACTACTGGTGTGGTTGACACCATTGAATTTGATGTGTGTCTAGATAGCCTATAAGCAACAGAAATATCAAAATACAACAAGTTTGTGATTGGTGATTTTAAGCAACAGTCAAGTGCTTTTCAGTGACACAATGATATAAATATTATATGTACCTCAGTTGGTCAAATCCTTAAAATATCATAAAAAAGCTTTCCTTTGTTAGATGTGACACTTACGGTACTCCTTAAGGGAGGCTGTCTTACAGAACTCATGCATATGAGAATGATTGGTTTGCTCATCAGGTGTCTACAAGCCCTTTCCCCTGTCCTAATGCCTTAAAGGGGGGCATTTCCACATCGCTTTTCAACTACCCAGTACAAGAGCTTGTTTACATTTCATCAAGCTAACTGTGTTATCTGAGTTTCAAGTTTTCAATAGAAGAAATCAAGCTCAATGGCGATCGTTTTGGAAACAGCAATAAAATTTAGCTCCTGCCCTCTTCTTTAAAGTGTAACAAATTACCTACTGAAAGGCATGAATCAATTATGGAACAGAAACTCACTAATGTGTGCTTCAGAAACAGATTAGATATGCAAGGTAGTCAAATGATGACAAACTGTTCATCTTCCTTCCAATACACATAAATCTTGATCTGAGAACTTGATAAATGTCAAACAAAACAAAACAAAATAGAGGCGCCAAAATCCCAAGGCATTAATCATGAAGCTGTGACCAATGGTAATGACTGCACGCTTGCAAGCCAATTTCTGCTTTCTCATAATCTTAGTAGCATTCCATGCATTTGGCAGTTAGAGACACATGCTTGGAAACTAGGTGCTTTACGGGTAAGGCCAACATATCACATGCAAAGGAGACAGGAATTTATCTTTCTTTTCATAATTAACCATGATCCTTTCAGCTCTTCAGAAAACCCAAGTGTATTTGCAGAGCAAGTCATTAGTGTATAGTCAAGCCTACGACACCCAGTCTGTCCTGGGCATGTTTCTGTTTGTTCTACCAACTAGTTTCAGTGCAAGGAGACCAAAGACTATTCAGTAATTTAAACTGAGGAAAATAAACGTGCTGATTTTTCATTGGGTTTAATAAGAGACAATTATGTATGTACTTGTCTGAAAATTCAGTGCCTTGTATATTACAGAGTTCAGTAAAGAGGACCTTATACATAAAGTACTTCAGATCCACTGCCTTTGAGAAATCTAAAACTGTCTCATTTCTCTGCAG
Seq C2 exon
ACAGAGCACACTCCTCCTTATGATGTGGTACCTTCCATGCGACCAGTGGTGCTGGTGGGCCCGTCTCTGAAGGGGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057914-Cacnb2:NM_023116:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.366
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062516=Guanylate_kin=PU(8.2=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: