MmuEX0008838 @ mm9
Exon Skipping
Gene
ENSMUSG00000057914 | Cacnb2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:MGI Symbol;Acc:MGI:894644]
Coordinates
chr2:14885533-14893269:+
Coord C1 exon
chr2:14885533-14885609
Coord A exon
chr2:14889569-14889702
Coord C2 exon
chr2:14893189-14893269
Length
134 bp
Sequences
Splice sites
3' ss Seq
AATTGTTTGTCTGTATATAGCTA
3' ss Score
6.11
5' ss Seq
AAGGTAACC
5' ss Score
9.24
Exon sequences
Seq C1 exon
TAAATCAGGAGGGAATTCATCATCCAGTTTGGGTGACATAGTGCCCAGTTCCAGAAAATCGACACCGCCGTCATCTG
Seq A exon
CTATAGACATAGATGCTACTGGCTTAGATGCAGAAGAGAATGATATTCCAGCAAACCACCGCTCCCCTAAGCCCAGTGCAAACAGTGTAACATCACCCCACTCCAAAGAGAAAAGAATGCCCTTCTTTAAGAAG
Seq C2 exon
ACAGAGCACACTCCTCCTTATGATGTGGTACCTTCCATGCGACCAGTGGTGCTGGTGGGCCCGTCTCTGAAGGGGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057914-'19-16,'19-12,20-16
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.837 A=1.000 C2=0.366
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(8.2=55.6)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGGAGGGAATTCATCATCCA
R:
TCATACCCCTTCAGAGACGGG
Band lengths:
154-288
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types