MmuINT0027912 @ mm9
Intron Retention
Gene
ENSMUSG00000057914 | Cacnb2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:MGI Symbol;Acc:MGI:894644]
Coordinates
chr2:14885533-14889702:+
Coord C1 exon
chr2:14885533-14885609
Coord A exon
chr2:14885610-14889568
Coord C2 exon
chr2:14889569-14889702
Length
3959 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
AATTGTTTGTCTGTATATAGCTA
3' ss Score
6.11
Exon sequences
Seq C1 exon
TAAATCAGGAGGGAATTCATCATCCAGTTTGGGTGACATAGTGCCCAGTTCCAGAAAATCGACACCGCCGTCATCTG
Seq A exon
GTGAGTAGGTCATCGGTGCTGACCATGCTTCTGCCTCTCATGCTTCCCCAGACTTCTTTAGTTGCATGAATTTACAAACCTACAAATGTGGAAATTCATCAGATATAAGAAGGCTTCCATGGAATTAGGGGATAAGGGGATATGGACAATATTTCCTGGTATTGACTATCAAGCAAGAAAGTCGCCTGTGTTTGCTCTAAGTTTTTATAGAAGAAACAGTGGTAATTTAATTGGCTACCCTAGTCCCTCCTGTGACATGTTGTCAAGGGCAGCAAAGCTTTATGTGAATTTCAACTTCAGGGTATTTTACTGTAATTTGTCTGATAGAAATCTGGCAGCTTTACATCATGTGCAAACTTGAGGTTCTATATGCACTTACTGGAAGTTGACACCTTTTATCAAGTAAACAAAAGTACATATACTTTTAAGTGAGCAAAATCTGGACACGAAAATTATGTCAATTTGGGATCTATATTGGTTGACAAAACTATACATACACATATAACTCACAGCAATTTAAAGCCACTGAAAAAACTGAAGCAAGCTAGTCTGCTCAGAGTAGGCACCAAAGATTTGCAGTGTTGATGAGGTGCATATATCTACCGCGATGGAGAAGCACTTGGCAACCCCTGTATGTACAAGGGAAGGAACATGTGAAAGGGCAGGGATTCCTCTTTAGCCCTTACAGATACCCTAACTGCCTAAAAGGCCATCTCAGAATGGTCTGGAAGACTGGGGGGAGGGGGGGTGCTAGCATGAAAGAAGGTTACATCAGATTGTGATAAAACCCCTTATCTGCTGGAGATATGACAAGCTCTTCTATCTTCTAATGGTAAGACAACTTTGACTTGTGTTAATGAAATGCTGAAAATTTCCTGTACACTGGGGAAGAATTAAGCACACATATAACACGATGACATTAAGATGAGCTTAAAACTTCACTGGAGTATTTAAGATACAGGACTTGGGAATAACTTCCCTAAATGCTAAGACTAGAAAGCACTGAGACTGATTGGCCTGGAAGAAAAAAACAACAAATGTAATATACAACATCAGAATATCTTGGCTCTGATGAGTTTCTTATCAGCAGCTCAATGGATCTAAAAAGAATCTTCAGAAAATCCTAGGGACAATTTTTTAAGTCTCCTACCAAGAATAACTAACTGTGTCATAGCAAGCATGGACTGGCCTGCAAATATAGTTTTCATGTTTTGCTTACCAGAGGTTTTAACTTTAATTCTCAACTCACTGTTAGACCATGGAGTAATTTCCAATCCCTGTGTATGTAATGCGCATGTACAACACACACCTCAAACTACACCTGTGCTTAGACCTCAGCCCTGAACTTGGCTTGATTTGACCCAAGTTCTAAGAGTAACCTAAAATATATTCCTAAGGTTCTCTAAATAATAAGGTATGAGGCAGGAAAAGGATAGTAAAAAACAAACTACAAAATATATTTAAATCCCATGGAAGTCCTTTTCCCGAGTAATGCCAGTGCTTGCCTAGGTAAGGGAATTCACGTGTGATTGATTAGTGTGGGTAGCGTCTCTTACCAGAAGCATCATCTGAGGTAGGTGAATGAACAGAAAACTGAAGGAGTTGAAAACCTTGTGGCTTAAATGTGTTCTGAACAATGCATTTAGAATTGCTTCAGAACGAACACAGACACTTCTAGACCTAAAGCAAAAAAGTCACCATGCCCTAAGCCGGAAGGAGATTTTGAGCCTGTGCTGTTGAGCTGCAGGTGAATTTCCATCTGGAATTCAGGCTCTGTGTGGGTGACTGAACATCTCACCCTTGTCTGGCCTAGTCTTGTTTGCATTCCCATTCTTTATAAATTTGCAGGTTAAATTTCTTTCATTAAGAATTTCCTTTTAAGACAAATCTATCTGATGACCACAGCTGATGAGATTCCAAGATAAATCCTAAAATCCAATTCAGAAATGTCACCATCCTGGAGGCCTGTGAACTCTGGCATTTTTCAGAGTTTCTAGCCTCAGTTCCAATAAAGTTCTTGGAGGGTAGCTTGTCTCCAGATGTGGCTCTTCATAAACCCAGTGAAAGGTTGGAAGGATAAGGTATATGGGAATATGCCACCAGAAGGGAAAGAGACTTGATATTGGTTAAGAGCTATTATTTTATAATAGTAACCTAGATTGCCACCTTCATGTCCGGAAGTTTTTAACAGTCTGCTTCCTTGTTAAAGGGTACCATAAAGAAATCTTTCGCTGTGAGCAAAGCTGTAGTGTAGTGTAAATGTCTAGATTGATTCCAAACACCTGAAATTTTATGACTGTGGCATTTCTCGCAGACCAAGATCTGAACCTTTAACTAATTAGTATGTATAAACTAGACCAAAAGAAAGTCCCTTACCCATAAAATAGCAGAGCTACAAGACTGTGCTGGCTAGCCAGAGGTTTGCCCCTTCACAGATTTCTGAACTAATCAATCAAACAAACAAACAACAACAACAACAAAAACAATGAAACAGGAGACCCACCACTCTCTGGTCTGAAACTGCACAATAATAGGCTGTGTACCAGATGATCTTGGGTGCTTTGAAAAGGCCAGGAGAGGCAACTCAGTTTAGGTTGTGTTTCAGGGTGGCTGATCCTAAGCACCAAACTGTTAACTCTAGCTAGTTAGTCTTTAAATCAGTGCATTATGCAATCTGTTCAGGAGTTAATATGTTGTGCGCAAGGCCTTATAAGGTGGGCACATTTCCTTTTCTAACGCTTGACCTACTCTCAACCATGAAGTAGTTATCTAGTAAGCTCAGTTCTGATACTGTTCTAAACCCTGATTCTGAGCACATGACCAATGAGGAAGTAAAAGGAACAGAAAGAACACATCTAGATGGTGAAAGCATCTCACCTACAAGGTGGTGTGGTGCAGTCATGGGCCCAATTCTAAGGCAGGAGCCATGGGTCCACAGCTTGGCACTGCTAGACTTACGCCAAGAATAAGCCCCTTGCATTCTGTGGGTTCAGCCTCTGAGTCTTAAAAACACAGGTTGATTTGAGTTGATCTTAGAAACTCCCTACCTGATTCTGTAGTTGATTAAAATTCCACAGTAATTTCATGTAGAAAGTTTTCATAACCTTGAAAATGAAATGATGCATTTTTTTTTTCATTTACTGGTTTTAGAGCTATATTTTCAGGGAAATGCGTTTCAGAAGGGAAAACACTCCAAGCATTCCAACCTGGACCATTTACTCCTGAGGAAACAAGAGGCCTGTTCTTTGGGGCTCTTGGACTCTGCCTCAGAGACTAGGAAACTACCCAAATCCTAACTGACTTTGATAGAATGATTTTGTTAATCTGGTATTTCCCACCAGTCATCAATCAGGCGCTCTGAGGACACACATTCTACCTTGAAGTCACTTCAATCCTGTGTGTCCCGGAACACCCTAACAATCATTTATAATTTCTTTGGTGTATCGTGGATCAAGAGCTTTCTATTCTTTTTTCCTTAAATGTCTGTTATAATTTTAATGAAACTTTTTTACTGGTCCCTGTTCTCCTTATATAAAATCAGGAAAAAAAAATGAGAAGACAGAAGCCTATCATATTAAATGTTTCCAAAGTACTTGTCTTTTACCTAAGAGCTGGGGTATGACCTTGTACTAAGGCCAAGTGCTTTGTAAATTACATTTATAATCTAATATGGAGAATATCAATGTTTGAAGCAAATACAAAGTATTCCTCTACAGGCTCTCAAGAGATCTTGCACTAACTTGTGCAAGCAGCTATCACAAGGGTATCTTTCAGTCTTGTTAGATTTGACTGTATTGCATCTTGGCATGTCTTACATATTTTACTCTGTGTAATAGACTGCACATTCATGATAAATCTTCTGCATTGGTTATTCTATTTGCTTTTGTTTTATTTTCTTTATAACCTGCTTTTCCTTTCCTATCCACCTGATGACTTTTGAATTGTTTGTCTGTATATAG
Seq C2 exon
CTATAGACATAGATGCTACTGGCTTAGATGCAGAAGAGAATGATATTCCAGCAAACCACCGCTCCCCTAAGCCCAGTGCAAACAGTGTAACATCACCCCACTCCAAAGAGAAAAGAATGCCCTTCTTTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057914-Cacnb2:NM_023116:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.837 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: