GgaINT0097890 @ galGal3
Intron Retention
Gene
ENSGALG00000008591 | CACNB2
Description
NA
Coordinates
chr2:19071276-19075329:-
Coord C1 exon
chr2:19075253-19075329
Coord A exon
chr2:19071410-19075252
Coord C2 exon
chr2:19071276-19071409
Length
3843 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
AATTGTTTGTCTGTATATAGCTA
3' ss Score
6.11
Exon sequences
Seq C1 exon
TAAATCAGGAGGAAACTCTTCATCCAGTCTGGGTGACATAGTTCCTAGCTCCAGAAAATCGACGCCTCCATCATCTG
Seq A exon
GTGAGTAGGTCACGAGCCCTTCAGTTTACAGGATCAGGCACCTCATCTGTTAAAATTTACATTACATTTAGTGCAATTTTTCTTATTTCCTGTGCAGTTGTGTTGCCCTGCAAGGCTGCGTTGGGTAGTTTAAGAGTTAATGCCATCAAGTTTAGGTAATGATAGGGCTCTTAACAATCCACATAATTCCTTCATTCTTTATTTTTGCCATAAAGTTTTATAGCGGAGACCTAATGAAATGGTGAGACTGTCTTGTGATAGAATAATTAAAGGCTTAGGCTCTAAGCAATCCTGCTGAATAAGAAATACATTCTAGCAGGGAGAAAGAGCAGCAAAAAGAATAAAAACTCCCAGGAGGTTTTTGCAGTAGCATCAACAACCAGGAGCTTTCACTATCACAATTCTGATAATGATGATCTGCTTCACATAATTCTTGAATACTGTTTGTTTTGGATTTTTTTTTTTGCTTTTATGACAATTTTATTTTTTTTTCCCCCACAAATACTGTTCTGAATTTAGAATAGACAGATTTTAACTTTTGTTAAGTTCAAGCAAATTCATCATGAGTTGGAGCAGGACGCTGGCATTAGCTTCAAATATATTATTTCCAAATATGTATTCAAATTCAGCTGCTTTATGGTTGGACATTTTATCTACTCCTGAGAAACAAAATGGAGAGTTGGAATACTTGAGATCAGAAAGTTCTACAAGTATTGCTAGCATCTTGCCTACTGAGGTAAAGACGAGTATTTTTCAAACATGTTAATTCATACGGAGGATGATCTACAGAGCAGGCATCTTTGCATGTTCATGAAGATTTTTAAAATATTTACTTGGACGTTAAGAAGGAGACAGAAGAGTTCAGTCAAATTATGGTAGTAGCCTCATTTGCTTAAATTAATTGAAAAATGTGTCTGTCTTTCTGGTGAAACCACAAGTTAATTTATAATGACCAATTTTATTACAGTTACAGTTTGCTTTACCAGAAGGCCACCTAAGTTCCCTACCAACCATTTTTGTAAGAAAATATGTATTTTAGTTTAATAATATGTGTCCATCAGAAGTCAGTAAAACGCACTTTAATCTTTTTTTTGCAAAGGCCTTAAACTGTCATGTTTACTGTCAAGGCCTCATTTTTCAATGGCTGCATTTTTGAAGTAGAAAGTATCTGGGGACCTATGTTGTAATTTTGTAAACAGAACATCTGAAATGCTAGAATATTTTTATATACTGCAAACACTTAGATACCAGTACATAGGAAATTTTCAGAATGTTTCACAGAATTTAGAGGTAAGAGAGAGTGTGTTGGCAACATAATTATGCTAATTGCTAGTGATGCTGTAATTTTCATTGCATTGAGTCATTTCTTCGGATGGTGGTTTTCAGGAAAATGATTTTTTGGAGAAAAAAAAATGTGTTTAAGTTGATTCAGTTACACTGAAGATTTGGAGAATATTTATACGAGTAGTATGTGTTAGCTTATTCTATGATCTTGAGATTTGGACTTTGCAGTGTTTTGGTGATAATACATACCAAGAATGAAGAAAGAAGCATAATTTATAACTAATACTACAGAAAAGAACTTGATTTTTTTGAAGTACAGTTCAATTCTAACCTGATAAATTTCAGCTGTTATCAGTTCTCCTCTTTGTGAAAGTAAAATAACTGTCAAAACCAGCAAATAATGAATTGAAGAAATGATAACTAGAATAAGTTAATCACATGTTTCGAATTTGAGTCAGGTATTTTTTTTTCCATATAAGAAAAGGTGAAGAACCACTGAAAAACATGTGAAGAGGAGGCCCTTAGTCCTTAAATAATCTGTAGTAATCAACCCATACAGCCCTCACTGACCACCAAACAGGATGAAGATAATGGTGAAAATGAGTTTAAAAAAAAAAAAAAAAGACACAACAAACTAAAGATAATTGGCAGTTAAAAAAAAAAAACAACAACAACAACAAAAAAAAAAACTGACAAACTGACACAGACTTTATGTAGTGGGAAAACTGAGAATGAAAAATTAATATCAACTTATATCTGATAAAATGTTGAATTTCTCTTTTACAGGAAAAGCTTAACAACCCCAGTTTTCCTTACAGATGATTTTAGTTGGNNNNNNNNNNGACGTAGAAGTTAAGGAGTTTTAATACGCCTGATTATGAGTGATTTATAGCATCTGTGCTGGCCTGTATTCAAGAAAAGAATGTGTTCTTTTTATATTTATGAAGAGGGTGAAGGAACATTGTTGCTGGAAGACAGTGTTATGTGATTTCTGTGGCTGTTTTTAGGAACAAGTCTATAGAAACAGGCTGCAGATCTGCTCACAGCCCTTCTTGTCAAAGTCAGACTCAAAGGGGGAGTTGCAAACTCAAGGCTTGTCAAGGATCATGGGATTAGATGTGTAGATAATTCAAATGGGAAAATATACTTCACTCAAAGAGATTGCTGTCACAGGTGTCTCTTAAATCAGTAGCTGTATACAGGCTTGACAGAAATACACATTTTTGTATAATTTATTAGCACATGCCACTATATTAATTGATGTCTTGCTCATCAAGCAGCTGAAAGAAAGTCTTTAAGGTGGTTTCATAATAGTTTACAGTGATTAATTATAGGTTTGATTTAAGTCTATGCAAATGATGCTGCTTACAGATTCTTTAGAGATACACTCAGTTCACCATAGTGTCAGGGCAAGAGAAGACTGTTGGCAGTGGGTGTCAAGAGGTGGGTAAGGTCTTCATGCACAAGGGTGATGTTGTATAGCATGTTTGTACCTTTTGAATGTATTTTTTTTCTGAAGACAGCACCTAAGATCAGGATTGAATGCTGTAAAAAGAAAGCTTATGAAACTCTCAGTTTCTTGCTTGTTTTGGAGGTAGTTAGCAGATATCTGTTGGACCTTTCCCTCAGAATAACCTGGACTTGTATTTTGAAAATGTGTCTATTTCTGACTCCATTATGAGTTTTGCTTATACTGCAGTTAGTTACTTACTAAAAAAGGCAGATATTTTATGTGTATGATACAAGCTTTGTGTGCTGTTTCAACCTTTGTGAAAGATGTTGAACAGCAGTGGTTTGTTGTTTTCACTTCCATTTTGGCCTACCTACATCCTCACTCTTCACACAGGATCTAGGTCTTTCAGATTACCTATGTCTCTTCTCTCTTCTGCTGCCCATTCTTCTTAGTTTTGACTATCAGTAGATCTTCTTTTATTATTTCTAATAAACATACCTTATGTCTGCAGTGCAGTTTTGTTAAAATGGTTAAATACCCATTGTAGTCAGTTGTAAGATAAATGTAGACATTACTGTGCCACAACTAGGCTGATTTTGGCCCCCAAAATTATTTTTTTGTTTTTTGATTTGCTTAAGATACATTAGTACATTTTGAATTTCAATTGATGGTACAAATTTTGAATTAGTTTTCATAGCCATAAAATAATTAAGATGTTGCTGGCAAAAAAAATCTGTTATTTATATTGGTGAAAGTATTATTAATTCCAGTGAATTGGTTTGGATTTACACTAGTCTAACAAAAAAAGAACTTGGCCCTTCCTCTGTTTTGTAAAATTAATTCTGTATACGTCTGATTTAATTTTGTAATAAGGGATCAGAGGAAAATTGCCTTGTGTTTTCTAAACCTACTTTACTGCGACGTTAAATTTTTCCCATTGTTTTATTGTGTTTTGTATTCATGATTAAATTATTTTATTCCTATTATTTTTATAATCTTTATTTTACTCTCGACAGTTTTATTTTTCTTTATTTCTTTTTTTTTTTTTTAACTTATTTTTGCTTTCCCTGTCATCTGATAATTCTGAATTGTTTGTCTGTATATAG
Seq C2 exon
CTATAGACATAGATGCCACTGGCTTAGATGCAGAAGAAAATGATATTCCAGCAAACCATCGCTCCCCCAAACCCAGTGCAAACAGTGTAACATCACCCCACTCCAAAGAGAAAAGAATGCCCTTCTTTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008591:ENSGALT00000013988:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.849 A=NA C2=0.978
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]