DreINT0040141 @ danRer10
Intron Retention
Gene
ENSDARG00000099045 | cacnb2a
Description
calcium channel, voltage-dependent, beta 2a [Source:ZFIN;Acc:ZDB-GENE-080808-7]
Coordinates
chr7:71622995-71625335:-
Coord C1 exon
chr7:71625259-71625335
Coord A exon
chr7:71623129-71625258
Coord C2 exon
chr7:71622995-71623128
Length
2130 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GTGTGTGTGTGTGTGTGTAGCTG
3' ss Score
8.3
Exon sequences
Seq C1 exon
TAAATCAGGGGCAAACTCTTCATCCAGTTTAGGGGACATTGTTTCAAACTCACGGAAATCAACTCCTCCCTCCTCAG
Seq A exon
GTAAGATATCAGCATCTGATCAATGCTGTATTAGTCATTCATTCATTCATTTTCCTTCAGCTTAGTCCCTTTATTTATCAGGGGTCTACACAGCGGAATGAACCGCTAACTATTCCAGCATGTGTTTTGTGCAGCGGATCCCCTTCCAGCTGCAAACCAGTACTGGGAAACACCCATACACACTCAATCACACACACTCATAGACTACGGCCAATTTAGTTTCCTCAATTCCCTTATAGCGCATGTGTTTGTATGATTTGCAGTTCCTTGCAAGACTGTGTGTTTGTGATCGCTGGTGATCGTGACACAGATCATGTGGTTGTTGGCCTGAACTACATGTCAGCTTTACACACATGCAACTGCCCTCGGACTATTTAAAGTAATTGTCAAAATGTTATTTTTCTTATGTCAGCGTCAAAGATTCACGTGAACTTTAAATCGTCTTAACAGATGCCAGTTAGACTGCTCCATGCAAATACCCTTGAGCATATGCTATCCAATCACGTTTACACAACCCTGGAAAACGAATGTGATTGGCTGTTTTAATCTGCGAAGTGTAGACGCAGACATATTTTGTGAATAAACAAATGAAGCGTGCAGTAACCGTGAAGTGCTCAGCCACAGAGGTGGCTCTGACACTTGAGCAGGATTTTTAGCAGCTTTATAGTGCGCACCACAAAATGGTAAAATATGCGTCTGAGCAGGACTCTTACAGTGTAATATTGCATTTACGTTACAGCCTTTGTCTTTCATGCATTATTTTATGAATATCACATGAATCTGTGTGCAGAAGACATATGCATTACTTCTGCACTAAATTATCTGTTATTGTTACAGTCTTAGGCCCCGTTTACACTAATGCGTTTTCATTTTAAAATGCATACGTTTTGCTACGGTTACGCCATCCTTCCACACTACGCCGGAGTTTTCGAGCGCTGAAAACGGAGTGTTTCGAAAACGCTGAAGAGGCCGTTTTCATTCAGAAACGCTGCTGTTCTGTCGCAGTGTGGATGGGGGAAAACGGAGACACCTTAAAACGGAGGCGGGGCTGCTGAGATTCGCTACCTGATTGGGGCTTTTGTGTCATTGCGTATCCTTCCCTTATTCGTCAAGCCCCTATCACATGACTATAACACATGGCTTTAACGCTACCAGAAGACAGTACTGTAAACAACAACATGGACACAGAAACGGGAGCGTTGTTTGCACTATTGTCTGTTTTAGGCGCCATTGTGCAGTTATTCATTTGTTACGTTTAGTAACAACTCGACCTCGTCGTCTGACCACAAAAATACTTCTCTTGCTTTCTTTGCCATCGCGTTCATTATTCAACCGGCGTTTGTTGACTAACAATAACTAAATGCTGAGCGAGACGCATGCTTTCTGTTTATACTAGAACACGCATTACCAGAGTGCGCGAATGCTCACGTGATGTACGTTTTTGGTGGCGTAGTGTGGACGGAGATATGTTCAGAAACGCTAGTGTGGACGTGGATCGTTTTTGATCTAAAACGCCGTTTTATAACTAAAGCGTACTAGTGTAAACGGGGCCTTACTAGAGCGAGCAGCGATCAATGTGTTTTTTGTTTAAATATTTTTTATTGATTTTCAGTTTTTCAAATGGGAAAGAACAACAATACAAAGCCAAACCCATACCAATCCAACAGCGGGATAGCGCAAAAATGAACAAATATACAATTGTACATGTAGGTTTAAATACAAATATAAAGAAATAATAATTATTGTAACAATAATAACAATAAATTAAAATAAAAAAACAGCGATCAATGTGTTGACTGCATTTATTTAGTAGTAAAATTAGCTAGATGTTGCATTATTAACGAAATTAAAGTGTTGATAGTGCATTTGTTTTGCACTAAAATTAGTCATTGGTAATGCTGCATTGTTTTTGCAACATGATATGAGTTGTCAAACAGCATGTGGATATATTTCCTGCAAATAAATAGCAAATTGTGGCGCATTGCAAAACATTTGCATCTTGTGTTTTATTGACGTCACCAGCAACTAGTCGACGTCGACTCGACTTTGATAACATGAAAGTCAACTACCAAAAATCTAAAGTTGTTCAACCCCTAAAATATACTTATATGTGTGTGTGTGTGTGTGTAG
Seq C2 exon
CTGTGGACATTGACGCCGCAGGTTTAGATGCAGAGGAGAGCGATCCTCCTCCCCATCAGCGATCTCCCAAAGCCAGCCCAAACACAGTCATATCCCCTTTAGCCCGAGAGAAACGAATGCCTTTCTTTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099045:ENSDART00000168754:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.764 A=NA C2=0.813
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]