RnoINT0028237 @ rn6
Intron Retention
Gene
ENSRNOG00000018378 | Cacnb2
Description
calcium voltage-gated channel auxiliary subunit beta 2 [Source:RGD Symbol;Acc:67385]
Coordinates
chr17:81995425-81999635:+
Coord C1 exon
chr17:81995425-81995501
Coord A exon
chr17:81995502-81999501
Coord C2 exon
chr17:81999502-81999635
Length
4000 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
AATTGTTTGTCTGTATATAGCTA
3' ss Score
6.11
Exon sequences
Seq C1 exon
TAAATCAGGAGGAAATTCATCATCCAGTTTGGGTGACATAGTACCCAGTTCCAGAAAATCGACACCTCCATCATCTG
Seq A exon
GTGAGTAGGTCATCAGTGCTGACCAGAGTTTGCCTCTCGTGCTATCTGGAACTTCTTTAGTTGCATGAATTTACAAACCTGCAAATGTGGAAATTCATCAGATATAAAAAGGTCCCCATGAAATTAGGGGTGATGTGGACATTTTTTTCTGGCATTAAATATCAAAGAAGAATGTAGCCTGTGTTTGCTCTAACTGTTCATAGAAGTAACAGTGGTAATTTAATTGCTTACCCTAGTCCCTGCCGTGACATGACAAGGACAGCAAAACTTTACATGAATTTCAATTTCAGTGTATTTTGCTGTATTTTGTCTAATAAATCCAGCATCTTTGCATCATGTGCAAACTTGAAGCTCTATATGCACTTACTGAAGGTTGACACCTTTTATCAAGTAAATATTTAGCAAAAGTATATATATTTTTAAGTGAGCAAAATCTGGGCAGAAAAATATGTCAATTTGGGATCTATATTGGTTGGAAAAACTATACACATATAACTTGCAACAATTTAAAGCCACTGACTGTTAAGCAAGCTAGTTTGCTCAGAGTAGAAACCAAAGGCCTTGCAGTGTTAATGAGGTACATACATCTGCCTTGATGGAGGAGCAATCAGGAATCCATGTACACACAAGGGAAGGAACATGTGAAAGGCCAGGAATTCCTCTCTAGCCCTTACAGATTCCTTAAAGACCTAAAGGACCATCTTAGGATGGTTCTGAAGACTGTATGGGGGCCCTAGCATCAAAGAAGGTTATATCAGATTGTGATAAAATCCCTGCTGGAGTTAAGTAAAACTCTTCTCTGTCCTCTACTGGTAATGCAACCTTGACTTGTGTTAGTGAAATGCTTAAAAGTTGCCCATGCACTGGGGAAAAATTAAGTGTGCATGTCAAATAATATTTAATTTTTGGAGTCACATGTTATCACTACTGAAAAATCTGTCCATAAATCATAAACATGATGACATGAAAATGAGCTTAAAATTTCACTGGAGTATTTAAAAGATACAGGACTTGAGAGTAACTTCCCTACATGCTAAGAAGAGAAAACACTGATATTGATTGGCCTGGAGAAAACAAAACAAATGTAAGATACACTATCAGAATACCTGAGCTCTCTGATGAGTTTCTTATCAGGAGCTCAATGGATCTAAAAAGAATCTTCAGAAAATCATGGAGAAATTTTTTCCTAGTCTCCTACCAAGGACAGCTAACTGCTCTGTAGCAAATGTGAACTGGCTTTCGAGTGTAACTTAATGTTTTGCTTACCAGAGGTTCTAACTTTAGTTTCCAACTCACTGCTAGACCAAGAAGTAATTCCCAATCCCCATATATGTAATGAGATTGCACAACACATACCTCAAACTACACCTGTGCCTAGACCTCACCCCTGAACTTGGCTTGACTTGACCCAAGCTGTAAGAGTAAGCTAAAATATGTTTCTAAGTTTCTCTAAATAAATAAGGAATGAGGCAGGAAAATGATAGTGAAAAGGAATGAAATTTTTTAAATATGTGGAAATACTTTTCCCTAGTAATGCTAATGTTTGCCTGGATAAGGGAATACAAGTGTGTGATTAATGTGGGCAGCGTCTCTCATGAGAAGCATCGTCTGAGTTAGGTGAGTGAACAGAAACTGAAAGGCTAGGAAAGCTTGGTAAACGTGTTCTGAATCTGCATTTAGAATTGTTTCAGAATTCTGCAAACACTTCCCGACCTAAGGTAAAGCAGAAAGTCACCGAGCACTAAGCCGGAAAGAGATCTGGGGCTCGTGCTGCTGAGATGCAGGTGAATTTCCCTCCGGAATCCAGGCTCTGTGTGAGTGACTGAACATCTCACCCTTGCCTGGGCTCGACCTGTATGCATACCCATTCATTATGCATTTCCAGTTTAAATTCTGTTTGTTAACAATTTCCTTTTAAAACAAGTCTATCTGATGATCACAACAGATGAGATTCAGCAGACAAATCCTAAAGTCCACTTCAGAAATGTCACCATCCTGGAAGCCTGTGAGCTCTCGTATTTGTTGGGGTTTCTAGCTTTGTTTCTAATAAAGTTCTTGGAGGGTGCTCATGCCTAGATGTGGCTTTCCTAAACCCAGTGAAAGGTCAGAAGAATAGAGTATATGGGAATATGCCACCAGAAGGGAAAGAGACTTGATATTGGTTAAGACCTGTTATTAGAATAGTAACCTAGATGCCCGTCTTCCTGTCCAGATGTTAATTGTGCTTCTTTGTTAACGAGCACATTAAAAAGTCCTTCAACGTGAGCAAAGCTGTAGTGTGGTGTAAACGTCTAGATTGGTTCCCAACACCTGAAATCTTGACTGTGGCACTGCTCTGCAGATCAAGGCCTGAACCTTTAACTAACTAGTTATGCATATACTAGACCAAAAGATAGTCCCTTACCCATAAACTACCAGAGCTGCAACACTGTGCTAAAGTGCCAGAAGTTCACCCCTTCACAGACTTCTGAACTAATCAATCCATCCATCCATCCATCCATCCATCAAACCAACCAACCAACCAATTAAACAGGAGATCTGCCTCTCTCTAGTCTGAAACCACTCAAATCATAGTAACTGTAAAACTGCAAAGTAATGTGCTGTGTACCAGATGACCTTGGGTCCTTTGAAAAGGTCAGGAGCGGCAGGCAGCTGTAAGCCTCAGTTCAGCTTGTGTTTCAGGGTAGTTGAACCTAAGGACAAACTGTTACTCTACCGAGTTATTTGTTCCTTAAATCAGTGCACTGTGGTGTTTGTTCAGGAGTTAACATTTTGCAAATGGTCTTATGGGGTGAATTCATTTCCTTTTTCTACTGCTTGGCCTACTCCGGCCATAAAGTAATTACCTAGTAAGCTCATTTCTGATACTGTTCTAAACCCTGGTCTCATGGACATGACCAATGAGGAAGTAAAAGGAACAGAAAGAATGCATCCAGATGGTGAAGGCACCTCACCTACAAGGTGGTGTGGTGCAGCCATGGGCACAATTGTAAGGAAAGAGCTGTGGGTCCACAGCCTGGCACTGCTGGACTTCTGCCAAGAGCAAGCCACTGGCATTCTGTGGATTCAGTCTCTGAGTCTTAAAAACACGGGTGGTTTTGAGCTGATCTCAGAAACTCCCTACTGGATTCTGTAGTTGATAAAATGTAGAAGGTTTACAGAAAATTGAAAATGAAAGTATGCATCTTTTTTCCCACCTCCTGGTTTTAGAGCTGTATATTCAGGTAAAACGCATTTCAGGAGTAAAAAATGCTCCTAGCACCCAACCTGGAAGCTTCACTCATGAGGAAACAAGAAGCCTGTTCTTTGGAGCCCTTGAACTCTGCCTCAGAGACTTGGGTCTCTGATTTTGAAATAATGAAATCCTAATTGACTTTGAAATAATGATTTTGTTAATGTGGTATTTCCCATCAGTCATCAGTCAGGGTATCTGAGGACACACATTCTACCTTGAAGAAACTTCATTCCTATGTGTCCCAGAACACCCTAACAGTCATTTATGACTTCTTGGGTATATCCTGGATTAAGGGTTTTCTATTCTCTTTTCTTTAAATGTCTATTATACTTCTAATGAAACTTTTTACCTGGTCCCTGTTCTCCTTTCATAAAATGAGAAGACTGAAGCCTATCATATTAAATGTTTCCAAAGTACTTGTCTTTTACCTAAGAGCTGAGCCATGACCTTGTACTAAGGCCAAGTGCTTTGTAAATTACATTTATAATCGAATAGGAAGAATATCAACATTTGAAACAAGTAAAAAGTGTTTCTCTAAAAGCACTCAGAGATCCAGCTGACTTGTGCAAGCAGCTATCACAAGGGTATCTTTCAGTCTTGCTAGATTTGACTGCATTGCATCCTTATTTTACACTGTAATAGGCTGTACATTCATGATAAATCTTCTACAGTGGTCAGTCTATTTGCTTTTGTTTTATTTTCTTTATAACCTGCTTTTCCTCTCCTATCCACCTGACGACTTTTGAATTGTTTGTCTGTATATAG
Seq C2 exon
CTATAGACATAGATGCTACTGGCTTAGATGCAGAAGAGAATGATATTCCAGCAAACCACCGCTCCCCTAAGCCCAGTGCAAACAGTGTAACGTCACCCCACTCCAAAGAGAAAAGAATGCCCTTCTTTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018378:ENSRNOT00000031542:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.852 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]