RnoEX0016178 @ rn6
Exon Skipping
Gene
ENSRNOG00000018378 | Cacnb2
Description
calcium voltage-gated channel auxiliary subunit beta 2 [Source:RGD Symbol;Acc:67385]
Coordinates
chr17:81995425-82003202:+
Coord C1 exon
chr17:81995425-81995501
Coord A exon
chr17:81999777-81999796
Coord C2 exon
chr17:82003122-82003202
Length
20 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCCATGCCGCTGTAGCTA
3' ss Score
6.61
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
TAAATCAGGAGGAAATTCATCATCCAGTTTGGGTGACATAGTACCCAGTTCCAGAAAATCGACACCTCCATCATCTG
Seq A exon
CTAAGCAGAAGCAGAAGTCG
Seq C2 exon
ACAGAGCACACTCCTCCTTACGATGTGGTACCATCCATGAGACCAGTGGTGTTGGTGGGCCCCTCCCTGAAGGGGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018378_MULTIEX1-3/3=C1-C2
Average complexity
ME(2-3[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.852 A=NA C2=0.370
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062516=Guanylate_kin=PU(20.0=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGACATAGTACCCAGTTCC
R:
CCAACACCACTGGTCTCATGG
Band lengths:
102-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]