GgaEX0012566 @ galGal3
Exon Skipping
Gene
ENSGALG00000008591 | CACNB2
Description
NA
Coordinates
chr2:19068451-19075329:-
Coord C1 exon
chr2:19075253-19075329
Coord A exon
chr2:19071111-19071130
Coord C2 exon
chr2:19068451-19068531
Length
20 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCCATGCTGCTGTAGCTA
3' ss Score
7.08
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
TAAATCAGGAGGAAACTCTTCATCCAGTCTGGGTGACATAGTTCCTAGCTCCAGAAAATCGACGCCTCCATCATCTG
Seq A exon
CTAAGCAGAAGCAGAAATCG
Seq C2 exon
ACAGAGCACATCCCTCCCTATGATGTAGTGCCTTCTATGAGACCTGTAGTTTTAGTGGGACCTTCTTTGAAGGGATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008591-'7-13,'7-12,11-13
Average complexity
C3
Mappability confidence:
100%=86=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.849 A=1.000 C2=0.178
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACTCTTCATCCAGTCTGGG
R:
GAAGGCACTACATCATAGGGAGG
Band lengths:
102-122
Functional annotations
There are 0 annotated functions for this event