MmuEX6099084 @ mm10
Exon Skipping
Gene
ENSMUSG00000057914 | Cacnb2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:MGI Symbol;Acc:MGI:894644]
Coordinates
chr2:14963906-14971642:+
Coord C1 exon
chr2:14963906-14963982
Coord A exon
chr2:14968218-14968237
Coord C2 exon
chr2:14971562-14971642
Length
20 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCCATGCTGCTGTAGCAA
3' ss Score
6.83
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
TAAATCAGGAGGGAATTCATCATCCAGTTTGGGTGACATAGTGCCCAGTTCCAGAAAATCGACACCGCCGTCATCTG
Seq A exon
CAAAGCAGAAGCAGAAGTCG
Seq C2 exon
ACAGAGCACACTCCTCCTTATGATGTGGTACCTTCCATGCGACCAGTGGTGCTGGTGGGCCCGTCTCTGAAGGGGTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057914-'23-34,'23-31,27-34=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.822 A=1.000 C2=0.367
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(16.0=53.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCAGAAAATCGACACCGCC
R:
TCATACCCCTTCAGAGACGGG
Band lengths:
109-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types