GgaEX0012566 @ galGal4
Exon Skipping
Gene
ENSGALG00000008591 | CACNB2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:HGNC Symbol;Acc:HGNC:1402]
Coordinates
chr2:19022465-19029338:-
Coord C1 exon
chr2:19029262-19029338
Coord A exon
chr2:19025129-19025143
Coord C2 exon
chr2:19022465-19022549
Length
15 bp
Sequences
Splice sites
3' ss Seq
TCCATGCTGCTGTAGCTAAGCAG
3' ss Score
-6.03
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
TAAATCAGGAGGAAACTCTTCATCCAGTCTGGGTGACATAGTTCCTAGCTCCAGAAAATCGACGCCTCCATCATCTG
Seq A exon
CAGAAGCAGAAATCG
Seq C2 exon
ACAGAGCACATCCCTCCCTATGATGTAGTGCCTTCTATGAGACCTGTAGTTTTAGTGGGACCTTCTTTGAAGGGATATGAGGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008591-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.852 A=NA C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062516=Guanylate_kin=PU(40.5=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACTCTTCATCCAGTCTGGG
R:
GAAGGCACTACATCATAGGGAGG
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]