BtaEX0006804 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022000 | CACNB2
Description
Bos taurus calcium channel, voltage-dependent, beta 2 subunit (CACNB2), mRNA. [Source:RefSeq mRNA;Acc:NM_175789]
Coordinates
chr13:33253868-33254693:+
Coord C1 exon
chr13:33253868-33254001
Coord A exon
chr13:33254147-33254166
Coord C2 exon
chr13:33254633-33254693
Length
20 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCCATGCTGCTGTAGCTA
3' ss Score
7.08
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
CTATAGACATAGATGCTACTGGCTTAGATGCAGAAGACAATGATATTCCAGCAAACCACCGCTCCCCTAAACCCAGTGCAAACAGTGTAACGTCACCCCACTCCAAAGAGAAAAGAATGCCCTTCTTTAAGAAG
Seq A exon
CTAAGCAGAAGCAGAAATCG
Seq C2 exon
GTGCAAAATCTGCAGATGAACAAGACCAGTGGAAACTGCAGGCTTGTTTTGGCGGTCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022000-'12-9,'12-8,13-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.714 C2=0.190
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSBTAT00000029344fB1285
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGTAACGTCACCCCACT
R:
TAGACCGCCAAAACAAGCCTG
Band lengths:
112-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development