GgaEX0012565 @ galGal3
Exon Skipping
Gene
ENSGALG00000008591 | CACNB2
Description
NA
Coordinates
chr2:19068451-19075329:-
Coord C1 exon
chr2:19075253-19075329
Coord A exon
chr2:19071276-19071409
Coord C2 exon
chr2:19068451-19068531
Length
134 bp
Sequences
Splice sites
3' ss Seq
AATTGTTTGTCTGTATATAGCTA
3' ss Score
6.11
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
TAAATCAGGAGGAAACTCTTCATCCAGTCTGGGTGACATAGTTCCTAGCTCCAGAAAATCGACGCCTCCATCATCTG
Seq A exon
CTATAGACATAGATGCCACTGGCTTAGATGCAGAAGAAAATGATATTCCAGCAAACCATCGCTCCCCCAAACCCAGTGCAAACAGTGTAACATCACCCCACTCCAAAGAGAAAAGAATGCCCTTCTTTAAGAAG
Seq C2 exon
ACAGAGCACATCCCTCCCTATGATGTAGTGCCTTCTATGAGACCTGTAGTTTTAGTGGGACCTTCTTTGAAGGGATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008591-'7-13,'7-11,10-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.849 A=0.978 C2=0.178
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACTCTTCATCCAGTCTGGG
R:
TTCAAAGAAGGTCCCACTAAAACT
Band lengths:
138-272
Functional annotations
There are 0 annotated functions for this event