GgaEX0012565 @ galGal4
Exon Skipping
Gene
ENSGALG00000008591 | CACNB2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:HGNC Symbol;Acc:HGNC:1402]
Coordinates
chr2:19022469-19029338:-
Coord C1 exon
chr2:19029262-19029338
Coord A exon
chr2:19025294-19025427
Coord C2 exon
chr2:19022469-19022549
Length
134 bp
Sequences
Splice sites
3' ss Seq
AATTGTTTGTCTGTATATAGCTA
3' ss Score
6.11
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
TAAATCAGGAGGAAACTCTTCATCCAGTCTGGGTGACATAGTTCCTAGCTCCAGAAAATCGACGCCTCCATCATCTG
Seq A exon
CTATAGACATAGATGCCACTGGCTTAGATGCAGAAGAAAATGATATTCCAGCAAACCATCGCTCCCCCAAACCCAGTGCAAACAGTGTAACATCACCCCACTCCAAAGAGAAAAGAATGCCCTTCTTTAAGAAG
Seq C2 exon
ACAGAGCACATCCCTCCCTATGATGTAGTGCCTTCTATGAGACCTGTAGTTTTAGTGGGACCTTCTTTGAAGGGATATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008591_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.852 A=0.978 C2=0.009
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(40.5=55.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACTCTTCATCCAGTCTGGG
R:
TTCAAAGAAGGTCCCACTAAAACT
Band lengths:
138-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]