GgaEX6018729 @ galGal4
Exon Skipping
Gene
ENSGALG00000008591 | CACNB2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:HGNC Symbol;Acc:HGNC:1402]
Coordinates
chr2:19025294-19031142:-
Coord C1 exon
chr2:19031006-19031142
Coord A exon
chr2:19029262-19029338
Coord C2 exon
chr2:19025294-19025427
Length
77 bp
Sequences
Splice sites
3' ss Seq
AATTTGTTGCTTTACTGCAGTAA
3' ss Score
5.17
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AAATTTAACAATGACTGGTGGATAGGACGGTTGGTAAAAGAAGGCTGTGAAATAGGATTCATACCAAGCCCAGTCAAACTAGAAAACATGAGGCTGCAGCATGAACAGAAGGCAAAGCAAGGGAAATTCTACTCCAG
Seq A exon
TAAATCAGGAGGAAACTCTTCATCCAGTCTGGGTGACATAGTTCCTAGCTCCAGAAAATCGACGCCTCCATCATCTG
Seq C2 exon
CTATAGACATAGATGCCACTGGCTTAGATGCAGAAGAAAATGATATTCCAGCAAACCATCGCTCCCCCAAACCCAGTGCAAACAGTGTAACATCACCCCACTCCAAAGAGAAAAGAATGCCCTTCTTTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008591-'6-10,'6-7,7-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=0.852 C2=0.978
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(51.2=47.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAACATGAGGCTGCAGCA
R:
TCTCTTTGGAGTGGGGTGATGT
Band lengths:
168-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]