RnoEX6054267 @ rn6
Exon Skipping
Gene
ENSRNOG00000018378 | Cacnb2
Description
calcium voltage-gated channel auxiliary subunit beta 2 [Source:RGD Symbol;Acc:67385]
Coordinates
chr17:81992308-81999635:+
Coord C1 exon
chr17:81992308-81992444
Coord A exon
chr17:81995425-81995501
Coord C2 exon
chr17:81999502-81999635
Length
77 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTTGCTTCACTTCAGTAA
3' ss Score
7.55
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AAATTTAATAATGACTGGTGGATAGGACGGCTGGTTAAAGAAGGCTGTGAAATCGGATTTATTCCAAGCCCGGTCAAACTAGAGAACATGAGGCTACAGCATGAACAGAGAGCCAAGCAAGGGAAATTCTACTCCAG
Seq A exon
TAAATCAGGAGGAAATTCATCATCCAGTTTGGGTGACATAGTACCCAGTTCCAGAAAATCGACACCTCCATCATCTG
Seq C2 exon
CTATAGACATAGATGCTACTGGCTTAGATGCAGAAGAGAATGATATTCCAGCAAACCACCGCTCCCCTAAGCCCAGTGCAAACAGTGTAACGTCACCCCACTCCAAAGAGAAAAGAATGCCCTTCTTTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018378-'15-13,'15-10,16-13=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=0.852 C2=1.000
Domain overlap (PFAM):
C1:
PF0001823=SH3_1=PD(44.9=47.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTGGTTAAAGAAGGCTGT
R:
GAGCGGTGGTTTGCTGGAATA
Band lengths:
174-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]