HsaEX6087747 @ hg19
Exon Skipping
Gene
ENSG00000165995 | CACNB2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:HGNC Symbol;Acc:1402]
Coordinates
chr10:18803165-18807897:+
Coord C1 exon
chr10:18803165-18803298
Coord A exon
chr10:18807265-18807345
Coord C2 exon
chr10:18807839-18807897
Length
81 bp
Sequences
Splice sites
3' ss Seq
AGCCTCTCCTCTCTCTGCAGACA
3' ss Score
10.57
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
CTATAGACATAGATGCTACTGGCTTAGATGCAGAAGAAAATGATATTCCAGCAAACCACCGCTCCCCTAAACCCAGTGCAAACAGTGTAACGTCACCCCACTCCAAAGAGAAAAGAATGCCCTTCTTTAAGAAG
Seq A exon
ACAGAGCACACTCCTCCGTATGATGTGGTACCTTCCATGCGACCAGTGGTCCTAGTGGGCCCTTCTCTGAAGGGCTACGAG
Seq C2 exon
GTCACAGATATGATGCAAAAAGCGCTGTTTGATTTTTTAAAACACAGATTTGAAGGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165995-'13-17,'13-16,16-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.269 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062516=Guanylate_kin=PU(8.3=55.6)
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTACTGGCTTAGATGCAGA
R:
CGCCCTTCAAATCTGTGTTTT
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)