GgaEX6018730 @ galGal4
Exon Skipping
Gene
ENSGALG00000008591 | CACNB2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:HGNC Symbol;Acc:HGNC:1402]
Coordinates
chr2:19022090-19025427:-
Coord C1 exon
chr2:19025294-19025427
Coord A exon
chr2:19022469-19022549
Coord C2 exon
chr2:19022090-19022148
Length
81 bp
Sequences
Splice sites
3' ss Seq
AATCTTTTTCTGTTTTACAGACA
3' ss Score
9.58
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
CTATAGACATAGATGCCACTGGCTTAGATGCAGAAGAAAATGATATTCCAGCAAACCATCGCTCCCCCAAACCCAGTGCAAACAGTGTAACATCACCCCACTCCAAAGAGAAAAGAATGCCCTTCTTTAAGAAG
Seq A exon
ACAGAGCACATCCCTCCCTATGATGTAGTGCCTTCTATGAGACCTGTAGTTTTAGTGGGACCTTCTTTGAAGGGATATGAG
Seq C2 exon
GTAACAGATATGATGCAAAAAGCATTATTTGATTTTTTAAAACATAGATTCGAAGGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008591-'8-14,'8-13,10-14=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=0.009 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062516=Guanylate_kin=PU(40.5=55.6)
C2:
PF0062516=Guanylate_kin=FE(10.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTGGCTTAGATGCAGAA
R:
CGCCCTTCGAATCTATGTTTTAA
Band lengths:
179-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]