MmuEX6099083 @ mm10
Exon Skipping
Gene
ENSMUSG00000057914 | Cacnb2
Description
calcium channel, voltage-dependent, beta 2 subunit [Source:MGI Symbol;Acc:MGI:894644]
Coordinates
chr2:14967942-14972120:+
Coord C1 exon
chr2:14967942-14968075
Coord A exon
chr2:14971562-14971642
Coord C2 exon
chr2:14972062-14972120
Length
81 bp
Sequences
Splice sites
3' ss Seq
ACTGTCTCATTTCTCTGCAGACA
3' ss Score
11.23
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
CTATAGACATAGATGCTACTGGCTTAGATGCAGAAGAGAATGATATTCCAGCAAACCACCGCTCCCCTAAGCCCAGTGCAAACAGTGTAACATCACCCCACTCCAAAGAGAAAAGAATGCCCTTCTTTAAGAAG
Seq A exon
ACAGAGCACACTCCTCCTTATGATGTGGTACCTTCCATGCGACCAGTGGTGCTGGTGGGCCCGTCTCTGAAGGGGTATGAG
Seq C2 exon
GTCACAGATATGATGCAAAAAGCACTGTTTGATTTTCTAAAACACAGATTTGAAGGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057914-'27-37,'27-34,29-37=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.367 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0062516=Guanylate_kin=PU(16.0=53.6)
C2:
PF0062516=Guanylate_kin=FE(10.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTACTGGCTTAGATGCAGA
R:
CGCCCTTCAAATCTGTGTTTT
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types