DreEX0018238 @ danRer10
Exon Skipping
Gene
ENSDARG00000009738 | cacnb4a
Description
calcium channel, voltage-dependent, beta 4a subunit [Source:ZFIN;Acc:ZDB-GENE-080320-2]
Coordinates
chr9:38307967-38308666:+
Coord C1 exon
chr9:38307967-38308043
Coord A exon
chr9:38308410-38308429
Coord C2 exon
chr9:38308586-38308666
Length
20 bp
Sequences
Splice sites
3' ss Seq
TCCTCTTTTCATCATCACAGGTA
3' ss Score
9.73
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GAAGTCCAGTGGAAACTCCTCCTCCAGTCTGGGTGAAATGGTGTCAGGCACATTCAAGCCCAACCCTGCTTCTGCAG
Seq A exon
GTAAACAGAAACAGAAAGTG
Seq C2 exon
GCTGAGCACATTCCTCCATATGATGTGGTTCCTTCCATGAGGCCGGTGGTGCTAGTTGGCCCATCACTAAAGGGATACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009738-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.963 A=0.857 C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCCAGTCTGGGTGAAA
R:
GCCTCATGGAAGGAACCACAT
Band lengths:
103-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]