GgaEX0018914 @ galGal3
Exon Skipping
Gene
ENSGALG00000012511 | B6IDG6_CHICK
Description
NA
Coordinates
chr7:36972839-36973471:-
Coord C1 exon
chr7:36973395-36973471
Coord A exon
chr7:36973025-36973044
Coord C2 exon
chr7:36972839-36972919
Length
20 bp
Sequences
Splice sites
3' ss Seq
GTTCTTATTTGGTCTTTTAGCAA
3' ss Score
7.09
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GAAATCAAGTGGGAATTCTTCTTCAAGTCTTGGAGAAATGGTTTCCGGCACGTTTCGAGCCACACCTACTTCCACAG
Seq A exon
CAAAACAGAAACAAAAAGTG
Seq C2 exon
ACAGAACACGTTCCCCCGTACGACGTGGTGCCCTCAATGAGGCCCGTTGTCTTGGTGGGGCCGTCGCTGAAAGGCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012511-'6-9,'6-8,7-9
Average complexity
S
Mappability confidence:
100%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.972 A=0.816 C2=0.193
Domain overlap (PFAM):
C1:
PF0308010=DUF239=FE(22.0=100)
A:
PF0308010=DUF239=FE(5.1=100)
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGAGCCACACCTACTTCCA
R:
CTCATAGCCTTTCAGCGACGG
Band lengths:
105-125
Functional annotations
There are 0 annotated functions for this event