BtaEX0006816 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002297 | CACNB4
Description
calcium channel, voltage-dependent, beta 4 subunit [Source:HGNC Symbol;Acc:HGNC:1404]
Coordinates
chr2:44410039-44411948:+
Coord C1 exon
chr2:44410039-44410115
Coord A exon
chr2:44411623-44411642
Coord C2 exon
chr2:44411868-44411948
Length
20 bp
Sequences
Splice sites
3' ss Seq
CTCTCATTGTTGTCTTTTAGCAA
3' ss Score
9.37
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GAAATCTAGTGGAAATTCTTCTTCAAGTCTCGGAGAAATGGTATCAGGGACATTTCGAGCAACTCCCACATCAACAG
Seq A exon
CAAAACAGAAGCAAAAAGTG
Seq C2 exon
ACGGAGCACATCCCCCCCTACGACGTGGTGCCATCCATGCGTCCGGTGGTGCTGGTGGGGCCATCGCTGAAGGGTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002297_MULTIEX1-2/7=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.852 A=1.000 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCAACTCCCACATCAACA
R:
TCATAACCCTTCAGCGATGGC
Band lengths:
102-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development