GgaEX0018914 @ galGal4
Exon Skipping
Gene
ENSGALG00000012511 | CACNB4
Description
voltage-dependent L-type calcium channel subunit beta-4 isoform c [Source:RefSeq peptide;Acc:NP_989675]
Coordinates
chr7:34847997-34848629:-
Coord C1 exon
chr7:34848553-34848629
Coord A exon
chr7:34848183-34848202
Coord C2 exon
chr7:34847997-34848077
Length
20 bp
Sequences
Splice sites
3' ss Seq
GTTCTTATTTGGTCTTTTAGCAA
3' ss Score
7.09
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GAAATCAAGTGGGAATTCTTCTTCAAGTCTTGGAGAAATGGTTTCCGGCACGTTTCGAGCCACACCTACTTCCACAG
Seq A exon
CAAAACAGAAACAAAAAGTG
Seq C2 exon
ACAGAACACGTTCCCCCGTACGACGTGGTGCCCTCAATGAGGCCCGTTGTCTTGGTGGGGCCGTCGCTGAAAGGCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012511_MULTIEX1-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.972 A=1.000 C2=0.231
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGAGCCACACCTACTTCCA
R:
CTCATAGCCTTTCAGCGACGG
Band lengths:
105-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]