GgaINT0045678 @ galGal4
Intron Retention
Gene
ENSGALG00000012511 | CACNB4
Description
voltage-dependent L-type calcium channel subunit beta-4 isoform c [Source:RefSeq peptide;Acc:NP_989675]
Coordinates
chr7:34848183-34848629:-
Coord C1 exon
chr7:34848553-34848629
Coord A exon
chr7:34848203-34848552
Coord C2 exon
chr7:34848183-34848202
Length
350 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GTTCTTATTTGGTCTTTTAGCAA
3' ss Score
7.09
Exon sequences
Seq C1 exon
GAAATCAAGTGGGAATTCTTCTTCAAGTCTTGGAGAAATGGTTTCCGGCACGTTTCGAGCCACACCTACTTCCACAG
Seq A exon
GTAAGGAGACTTTTATTTAAGGCAACTCTTGCTGTTTCTGTTACTTCTATTTTAAAAGTCACGTCTGAAAAGTGTGGGTTTTCCCCCTTTGCTGACTTATTAAGATGTTCTGCTGACGTGTGTGGAGGTGGAGAAAGACATCTATTTCCAGACATGCAGTAGTTGCTAAGGCCTCTGCAAAAGGGGCAGCTCTGCCCAGAACAGAACGAGTGACCAATTGAAATAGAGCTGATGGAAAGCAAGGTGCACGGAGGGAAAGGGAAGGAGCACTGAGAATGGGGTTTTGCTTGCAAGTGTTACAGTTGCTATGCACAGTGTGTGTTTAACCAAGTTCTTATTTGGTCTTTTAG
Seq C2 exon
CAAAACAGAAACAAAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012511:ENSGALT00000020437:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.972 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]