DreINT0040188 @ danRer10
Intron Retention
Gene
ENSDARG00000009738 | cacnb4a
Description
calcium channel, voltage-dependent, beta 4a subunit [Source:ZFIN;Acc:ZDB-GENE-080320-2]
Coordinates
chr9:38307967-38308429:+
Coord C1 exon
chr9:38307967-38308043
Coord A exon
chr9:38308044-38308409
Coord C2 exon
chr9:38308410-38308429
Length
366 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TCCTCTTTTCATCATCACAGGTA
3' ss Score
9.73
Exon sequences
Seq C1 exon
GAAGTCCAGTGGAAACTCCTCCTCCAGTCTGGGTGAAATGGTGTCAGGCACATTCAAGCCCAACCCTGCTTCTGCAG
Seq A exon
GTCAGCTTCTGATTTTAGGCTGATTCTATAGAAATTAAGGAATTAATGGCTATTTTCCATTAATGGCTAGATTAATGGCTTCATTAGTGCAAAAAAAGTGCTCCTTTAGTAATGCTATCTAAGCATATGGCACCTCATTAAATTTTTATGAAGAGATTATATTATTTTTAGTGCATTTTTAGTGAACAATGAAATTATAATGCAGTATGTCTTTTTATTTATTAATTTATAGTCAATTATATTTGACTTAAAGAGCAGTATCAATAATAATTGTAATAACAACATTATTATCGTTGTATATCCATATTGTTAATCATCTCTCTGTTTTTTTGGCTGATTGTAAACATCCTCTTTTCATCATCACAG
Seq C2 exon
GTAAACAGAAACAGAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009738:ENSDART00000123749:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.963 A=NA C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]