HsaINT0026596 @ hg38
Intron Retention
Gene
ENSG00000182389 | CACNB4
Description
calcium voltage-gated channel auxiliary subunit beta 4 [Source:HGNC Symbol;Acc:HGNC:1404]
Coordinates
chr2:151870842-151872493:-
Coord C1 exon
chr2:151872417-151872493
Coord A exon
chr2:151870862-151872416
Coord C2 exon
chr2:151870842-151870861
Length
1555 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTCTCGTTATTGTCTTTTAGCAA
3' ss Score
7.97
Exon sequences
Seq C1 exon
GAAATCAAGTGGAAATTCTTCTTCAAGTCTTGGAGAAATGGTATCTGGGACATTCCGAGCAACTCCCACATCAACAG
Seq A exon
GTGAGGGTTGTAGTTAAACTCTTTTTCATACACTGTATTCCTTTTAAAAATATTTGAACACACATGCAAGTAGTTTTGCTAATTTGGAAACAATTTGAAGGCTTAATTTAAAGATTCTCTAATTAATATTTCATTTCTCATTTGTTTTCTATGGTAATTTGATTTCATTTAAAATGGTATTAAAAATTCATGTCATTAGAATATAATTTTGAAAAATCTTATTTACCCCTCAGTGTTAATAACTGTCCATTGTGTAAATTGATATTCAAAAAATTCATTATTTTACCTAAGGAACGGACAGAGTTTAAGATGGTGAAGGCCAATAAAAAAAGGAAAAAAATGATGCAGACTCTCAAGAAAATGCTGTTTTCAGTCTCCATGTGGAATTTCAGGATGTATTAGTACAGCCCGAGCTGGAAGGGTTGAAGCAGAGAGTAAGGCAGGGCCCAAAGGAGGGAGGGCCTCGTTTACATTTGGACAGCAGACAGCCAAGCCCTGGAATTAATGGTAATGAAGAGATATTGGTGGCCTAATAGGGAATTGTGGTACATTTGGAAACGATGGAGTTATTCATGTAGGAATTTTTCTTCTACCACATTCCCTGATTCCTATCGGCTAATTTCATTCTGGCCTAGAACTGCTGTTGCATTAGGGCATCCAGTGTCCTAGTTACCAATTCCAATTGTATTACCAATTTGGAATGGCAAGTCCAAGGCCCTATTCTGGCCTACCAAAACTGGAGGCAACTGGATTGGTTCTGGAGTGGTTCTAAGTGTCTGGGTCCTTGTTCATGTGAAGCCCTCTTATCTACAGGACACTGAACCAAACCAGGTTTCTGAGTTGTACCCAACTAGACTGGAGCTGCTTGGATGTCCACAGAATCGCTTTAAATCAGTTATTGAGTATATTTTGCTTCGTTCCCATTTGTTGGACATTCAGGACATTGAACACTTTAGCTATTACAAACAGGAAAGAACAGGAATAACTCATTATAAATTTATCTGAGGAATAACTGGTTATAAATGTATTTGAAATTTAGAAGCAAGATAGTAGGAAAAATGTGCCAATATTCTAGAAAATGGGCAAAAATGCCCAAGGGACTGCAGAATTATGAGTTAACAAATATAAAAATAACTATTGATTGAGGTGATAGTCATTTTTGCCCAAGTGGTTATTCTGTTTCCTTTTATGAAATTGCATTTGTCTACCTTGTTCCCAGCAACACTGTGCTGTGTCCAGCACGGGAACAACCCATGGTGATTGGCTGGCCCGGAACTTCCAGTGTTGCTCTCAACTCCTGTACCCAATTCCCACCCAGTGAGAAATCAGGATATAAGGTCATTTGTACCAGGGAGGAAGCTGTCTGTTTTTCATACATCTTCAAAATTGACGTGTCCAGAATGAAATCATAAGGCAGGTTCTCCAAAGTGGGCGATAGGAAGGTGGTGAAGATAATTACAGGGACAAATGGGTACATTCTTCCATCTTTTAAACTCATGTACTGTCATTTGCAGAGTTTACATATTTTGATATGGCTCTCGTTATTGTCTTTTAG
Seq C2 exon
CAAAACAGAAGCAAAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182389:ENST00000539935:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.847 A=NA C2=0.960
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=PU(11.7=25.9)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(12.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
ENSP00000201943, ENSP00000353425, ENSP00000380490, ENSP00000390161, ENSP00000399242, ENSP00000410978, ENSP00000443893, ENSP00000489621, ENSP00000489677, ENSP00000489679, ENSP00000489697, ENSP00000489779, ENSP00000489787, ENSP00000489788, ENSP00000489818, ENSP00000489876, ENSP00000489881, ENSP00000489912, ENSP00000489953, ENSP00000489967, ENSP00000490124, ENSP00000490127, ENSP00000490145, ENSP00000490176, ENSP00000490247, ENSP00000490250, ENSP00000490252, ENSP00000490276, ENSP00000490298, ENSP00000490304, ENSP00000490337, ENSP00000490430, ENSP00000490443, ENSP00000490510, ENSP00000490572, ENSP00000490607, ENSP00000490651, ENSP00000490795, ENSP00000490891, ENSP00000490910
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development