GgaINT0045678 @ galGal3
Intron Retention
Gene
ENSGALG00000012511 | B6IDG6_CHICK
Description
NA
Coordinates
chr7:36973025-36973471:-
Coord C1 exon
chr7:36973395-36973471
Coord A exon
chr7:36973045-36973394
Coord C2 exon
chr7:36973025-36973044
Length
350 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GTTCTTATTTGGTCTTTTAGCAA
3' ss Score
7.09
Exon sequences
Seq C1 exon
GAAATCAAGTGGGAATTCTTCTTCAAGTCTTGGAGAAATGGTTTCCGGCACGTTTCGAGCCACACCTACTTCCACAG
Seq A exon
GTAAGGAGACTTTTATTTAAGGCAACTCTTGCTGTTTCTGTTACTTCTATTTTAAAAGTCACGTCTGAAAAGTGTGGGTTTTCCCCCTTTGCTGACTTATTAAGATGTTCTGCTGACGTGTGTGGAGGTGGAGAAAGACATCTATTTCCAGACATGCAGTAGTTGCTAAGGCCTCTGCAAAAGGGGCAGCTCTGCCCAGAACAGAACGAGTGACCAATTGAAATAGAGCTGATGGAAAGCAAGGTGCACGGAGGGAAAGGGAAGGAGCACTGAGAATGGGGTTTTGCTTGCAAGTGTTACAGTTGCTATGCACAGTGTGTGTTTAACCAAGTTCTTATTTGGTCTTTTAG
Seq C2 exon
CAAAACAGAAACAAAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012511:ENSGALT00000037762:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.972 A=NA C2=0.816
Domain overlap (PFAM):
C1:
PF0308010=DUF239=FE(22.0=100)
A:
NA
C2:
PF0308010=DUF239=FE(5.1=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]