MmuINT0027938 @ mm10
Intron Retention
Gene
ENSMUSG00000017412 | Cacnb4
Description
calcium channel, voltage-dependent, beta 4 subunit [Source:MGI Symbol;Acc:MGI:103301]
Coordinates
chr2:52465894-52467320:-
Coord C1 exon
chr2:52467244-52467320
Coord A exon
chr2:52465914-52467243
Coord C2 exon
chr2:52465894-52465913
Length
1330 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTCTCGTTGTTGTCTTTTAGCAA
3' ss Score
8.87
Exon sequences
Seq C1 exon
GAAATCGAGTGGAAACTCTTCCTCCAGTCTGGGAGAAATGGTATCAGGAACATTCCGAGCAACTCCCACAACAACAG
Seq A exon
GTGAGGGGGCTTGCTAACGCTTTCACTGGTTTGGAAATAAAGTCTTGATTTAAGATTTAAAGATGTAAAGCTTCTTTTATGAAAAATTTCCTTGCTCGTTTGAATGCTATTTGATTTGGAGAGTACTAATGATATAAGAATCAGGTATAGTTTTGAAAAATCTCGTTCACCCCCCTATAGCCAGTAACTCTCCCTGTATAAACCAATCTCAAGTTCATTATTTTACCCAAGAACTCAAGCTACTTTAAGATTGTGAGGCCAATAGAGATAAAAGTTCCTGAACTGTCACAGCAATGTACATCATGTAGATGAAGCTCTAGCATGTGTTGGGCCCAGGTTGTACATCCTGGGAGGGATATAGCCTCGCTGCAGCCAAGATGACTTTGTTTTTATGTTTGGACATCTGGCAATTCCAGGTGAGCCCTAGAGTTAATGCAACAGAGACAGGGTATCTCAATAAAGACTGTGTGTCTTTGGAAATTATGAAGATCTTCACCGAGAAAGTCTTCTTCTATCACATTCTCTGATGTGATTCTCCTATAAGCTAACTTCATTCTGGCCAGGACATGTGGTAGATTCTTAGTACCCAACATTAGGCTATCACACTGCAACATATATCAATGCCAGGCAGAGTCTGGGACAGCTTTAGGTGGATGCATGTAGACAGGACCTGCTGTTTGGATGGCAGCAAAACCACCTTTGTTGATTGTGAAGTAGATTTCTTTCTGTTTGCTGGGCACTAGGCTTCGTCACCAGCTTTTCTCTTACCACCTAGAGGGGAGAGGGGGAGCTGGCTGTCCAAGAGTTGAGAGGAGCATAGTAGAAACAGATGTGTCAGGAGGAACAGAGAACATCTGCTATATTACCTCTGGGTTTACCAACAGTCACAAATAATAAGACAGTAACAATAATAAGAATGTTTGAGATGATAATGATTTCGCTTACATTGTATCATTTCTTTTTTCTTTTTCTTTTCTTTTCTTTTTTTTTTTTTCATTTCGCTTAGCTAGCTTGCCCTCAGCTCCACTGTGAATAGCACACAATGTGGGCACACGCATGCTTAATGATTAGCTAACAACCTCCAGTGCTGTTTGAGTGCCCATCCCCAGCTTCTAATGGGAAAGTCATCGGTACAGAGAGGAAGGGGTCTGTATTTCATGTTCTCACACAGCCTGTCCAGAGCGAAGTGGCAGAGGGCAGTGACCTGCTGAGGGGGTGCCAGGCAAGCAGTGAGGACAGTTACAGGGTACCTTCTCCCATCTTTTAAACTCATATGCTATCTTTTACGGAGATTACATATTTTGATATGGCTCTCGTTGTTGTCTTTTAG
Seq C2 exon
CAAAACAGAAGCAGAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017412:ENSMUST00000102760:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types