RnoINT0028261 @ rn6
Intron Retention
Gene
ENSRNOG00000007666 | Cacnb4
Description
calcium voltage-gated channel auxiliary subunit beta 4 [Source:RGD Symbol;Acc:68385]
Coordinates
chr3:37988572-37990074:-
Coord C1 exon
chr3:37989998-37990074
Coord A exon
chr3:37988592-37989997
Coord C2 exon
chr3:37988572-37988591
Length
1406 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTCTTGTTGTTGTCTTTTAGCAA
3' ss Score
9.27
Exon sequences
Seq C1 exon
GAAATCGAGTGGAAACTCTTCCTCCAGTCTGGGAGAAATGGTGTCAGGAACATTTCGAGCAACTCCCACAACAACAG
Seq A exon
GTGAGGGGTCTTTCTACTCTCTGTAAACACTTTTACTGCTTTGGAAATAAAGGCTTGATTTAAAGATTTAAAGATTTAACGCTTCTTTTATGTAAAATTGCCTTGCTCAGTTGAATGCTATTTGATTTGGAGAGTACCGATGGTATAAGAAGTCAGGTCATCGGTATAATTTAAAAAATCTCATTCACCCTTAGCCAGTAACTCTCCCCGTATAAGCCAATCTCAACCTCACCCTTCTACCCAAGCACTCAAGATACTTTAAGATTGTGAGGTCAACAGAGATAAAAGTTCCGGAACCCTCACAGCAATGTACAGCTTGTACGTGAAGCTCTAACACGTGTTAGGACCAGGGTGTACATCCTGGAAGGGTTGTAACCTGGCTGCAGCCAAGATTACCTTATTTTTATGTTTGGACATCAGGCAATTCCAGCTGAGCCCTGGAATTAATGCAATGGAAACAGGGTATCTCAATAAATACTGTGTGTCTTTGGAAATTATGAAAAAAAGTTATCTTCCATCCCATTCTCTGACTCCTATCAGCTAACTTCATTCTGACCAGGATGTGTGGCCAAATCAGAGCACCCAAACTCACCAATTCAGATGGCAGGCTAACACACCACAGCATGTATCAATGCCAGGTGGATTCTGGGACAGCTCTGGAGGCTTGGTTCTGCTTGTGAGGATTCATTCTGACCTTCGGGGCTGAGAAACAATCTGTACGTGGCTGTACATAAATAGGACCTGCTGCTTAGAGAGCAGCAAAGCCACCTTTGCCTATTGTGAACCAGATTCTGCTTTCTGTTTGTTTGCCGGACTCTGGGCTCTGCAACCAGCTTTTCTCTTACCCCCTGGAAGGGACAGGGGAGACTGGCTATCTAAGAATTGAGAGGAGCATAGCAAAAACAGAGGTATCAGTATTCAGGAGGAATACGGAACATCTGCAGTATTACCTCTGGGTTCACCAAAGTCACAAATACAAGACAGTAACAGTAACAACAATAATACGAATGGGTGAGATGATAAAGATTTTGCTTACATTGTATCATTTCTTTTTTCTTTCTTTCTTTTTTTTAACATTCCCTTTAGCTAGCTTGCCCCAGCCCCACTGTGAATAGCACATCCAATATGGGCGCACACATGCTTAATGATTGGCTAACAATTCCAGTGTTGTTTGAGTGCCCATCCCAAGCCTCTACTGGGAAAGTCACTGAAGAGGAAGATGTCTGTATTTCATGTTCTCACACAGCATGTCCAGAGTGAAGTGGCAGGGGCCAGTGGCCTGCAGAGGGAGTGTCAGGCAGGCAGTGAGGACAGTTACAGGGTACCTTCTCCCATCTTTTAAACTCATGTGCTATCACTTAACAGAGGTGACATATTTTGATATGGCTCTTGTTGTTGTCTTTTAG
Seq C2 exon
CAAAACAGAAGCAGAAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007666:ENSRNOT00000059430:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.963 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]