RnoEX0016187 @ rn6
Exon Skipping
Gene
ENSRNOG00000007666 | Cacnb4
Description
calcium voltage-gated channel auxiliary subunit beta 4 [Source:RGD Symbol;Acc:68385]
Coordinates
chr3:37988276-37990074:-
Coord C1 exon
chr3:37989998-37990074
Coord A exon
chr3:37988572-37988591
Coord C2 exon
chr3:37988276-37988356
Length
20 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTTGTTGTCTTTTAGCAA
3' ss Score
9.27
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GAAATCGAGTGGAAACTCTTCCTCCAGTCTGGGAGAAATGGTGTCAGGAACATTTCGAGCAACTCCCACAACAACAG
Seq A exon
CAAAACAGAAGCAGAAAGTG
Seq C2 exon
ACAGAGCACATTCCTCCGTATGATGTTGTGCCATCAATGCGTCCTGTGGTGTTAGTGGGGCCATCACTGAAAGGTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007666-'11-9,'11-8,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.963 A=1.000 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTCAGGAACATTTCGAGCA
R:
CAGTGATGGCCCCACTAACAC
Band lengths:
107-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]