GgaEX1012541 @ galGal4
Exon Skipping
Gene
ENSGALG00000025788 | CACNB1
Description
calcium channel, voltage-dependent, beta 1 subunit [Source:HGNC Symbol;Acc:HGNC:1401]
Coordinates
chr27:4112265-4113409:-
Coord C1 exon
chr27:4113264-4113409
Coord A exon
chr27:4112506-4112520
Coord C2 exon
chr27:4112265-4112345
Length
15 bp
Sequences
Splice sites
3' ss Seq
CGCCTCGGGACGTAGCGAAGCAG
3' ss Score
-8.31
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
GTGCCCTGGACACACCTAGCTTTGCCTTTGAGCCCGATGAGTTAGAGGAGGAGGAGGCTGCGGAGACCCACTGCTCCCCTAAGAGTAGTGTGAGCAGTGTCACCACCCCCCCCGCCCACTCCAAGCGCATCCCCTTCTTTAGGAAG
Seq A exon
CAGAAGCAGAAATCG
Seq C2 exon
GCTGAGCACGTGCCGCCCTACGATGTGGTTCCCTCCATGCGGCCCATCATCCTGGTGGGGCCGTCGTTGAAGGGCTACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025788-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=0.600 C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Main Inclusion Isoform:
ENSGALT00000043800fB5702
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGCGCATCCCCTTCTTTA
R:
CTCGTAGCCCTTCAACGACG
Band lengths:
107-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]