RnoEX0016166 @ rn6
Exon Skipping
Gene
ENSRNOG00000004518 | Cacnb1
Description
calcium voltage-gated channel auxiliary subunit beta 1 [Source:RGD Symbol;Acc:68382]
Coordinates
chr10:85963135-85964802:-
Coord C1 exon
chr10:85964726-85964802
Coord A exon
chr10:85963471-85963490
Coord C2 exon
chr10:85963135-85963215
Length
20 bp
Sequences
Splice sites
3' ss Seq
CTGGCAATCTCTGGACCCAGCCA
3' ss Score
1.93
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
CAAGTCAGGTGACAACTCCAGTTCCAGTCTGGGAGATGTGGTGACTGGCACCCGCCGCCCCACACCCCCCGCCAGTG
Seq A exon
CCAAACAGAAGCAGAAGTCG
Seq C2 exon
ACAGAGCACGTGCCCCCCTATGACGTGGTGCCTTCCATGAGGCCCATCATCCTGGTGGGACCATCGCTCAAGGGCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004518-'20-9,'20-8,22-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGAGATGTGGTGACTGG
R:
AGGATGATGGGCCTCATGGAA
Band lengths:
103-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]