RnoINT0028227 @ rn6
Intron Retention
Gene
ENSRNOG00000004518 | Cacnb1
Description
calcium voltage-gated channel auxiliary subunit beta 1 [Source:RGD Symbol;Acc:68382]
Coordinates
chr10:85963135-85963490:-
Coord C1 exon
chr10:85963471-85963490
Coord A exon
chr10:85963216-85963470
Coord C2 exon
chr10:85963135-85963215
Length
255 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
CTTCCCTGCTTCCCTCCCAGACA
3' ss Score
10.6
Exon sequences
Seq C1 exon
CCAAACAGAAGCAGAAGTCG
Seq A exon
GTGAGTATGACAGCCTTCTGTGTCTGCCCCCCTGGGGATGAGCTGGGGGCCCTTCTAATACCTGTTTCCAGATCTTTCTCCCTTTACCCTCCTTCCTAGTCCTGCCTGGCCATCCCCCACCCCCAACCCTCTGACACCGACATTTGGGCTCTGGGGTCAGAGGGAAGAAAGACTGCACGGGGAGCCCAGACACTTGGGGAGAGGGGCTGATGCCGTCTCTCCTTTTGGGGTTTCCCTTCCCTGCTTCCCTCCCAG
Seq C2 exon
ACAGAGCACGTGCCCCCCTATGACGTGGTGCCTTCCATGAGGCCCATCATCCTGGTGGGACCATCGCTCAAGGGCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004518:ENSRNOT00000006098:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]