GgaINT0045679 @ galGal3
Intron Retention
Gene
ENSGALG00000012511 | B6IDG6_CHICK
Description
NA
Coordinates
chr7:36972839-36973044:-
Coord C1 exon
chr7:36973025-36973044
Coord A exon
chr7:36972920-36973024
Coord C2 exon
chr7:36972839-36972919
Length
105 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
GGGATGTTTTCCTCTTCCAGACA
3' ss Score
8.28
Exon sequences
Seq C1 exon
CAAAACAGAAACAAAAAGTG
Seq A exon
GTAAGTACTCCTTCTGCTTTCATTTTATTTTCCTTACTTTGAATGCATGATTCCCAGGTTTTTCAGTTTGATTAATGATCTGAAGGGGATGTTTTCCTCTTCCAG
Seq C2 exon
ACAGAACACGTTCCCCCGTACGACGTGGTGCCCTCAATGAGGCCCGTTGTCTTGGTGGGGCCGTCGCTGAAAGGCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012511:ENSGALT00000037762:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.816 A=NA C2=0.193
Domain overlap (PFAM):
C1:
PF0308010=DUF239=FE(5.1=100)
A:
NA
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]