BtaINT0030571 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002297 | CACNB4
Description
calcium channel, voltage-dependent, beta 4 subunit [Source:HGNC Symbol;Acc:HGNC:1404]
Coordinates
chr2:44411623-44411948:+
Coord C1 exon
chr2:44411623-44411642
Coord A exon
chr2:44411643-44411867
Coord C2 exon
chr2:44411868-44411948
Length
225 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TGTCCAATCGTCTCTTTCAGACG
3' ss Score
9.75
Exon sequences
Seq C1 exon
CAAAACAGAAGCAAAAAGTG
Seq A exon
GTAAGTCATGTTTCCTTTTTAAATCTCCTGTGAAGGTTTCTATCCATAAATGCCTGTAATGCTCCATTTCAGTGACCCAAATGGCTATAAAATGAGGGAGGCGTCTCCTTGGTGGGACCCGTGGTTATCATTTCTCATTTGGCCGGAGGATTGTGAATGTTGTGGCTGTGGAGGAGGGCTGCTGACCCTCACACCTTGTTATGTGTGTCCAATCGTCTCTTTCAG
Seq C2 exon
ACGGAGCACATCCCCCCCTACGACGTGGTGCCATCCATGCGTCCGGTGGTGCTGGTGGGGCCATCGCTGAAGGGTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002297:ENSBTAT00000002971:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]