RnoINT0028262 @ rn6
Intron Retention
Gene
ENSRNOG00000007666 | Cacnb4
Description
calcium voltage-gated channel auxiliary subunit beta 4 [Source:RGD Symbol;Acc:68385]
Coordinates
chr3:37988276-37988591:-
Coord C1 exon
chr3:37988572-37988591
Coord A exon
chr3:37988357-37988571
Coord C2 exon
chr3:37988276-37988356
Length
215 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TGTTGACTCGTCTTTTTCAGACA
3' ss Score
8.83
Exon sequences
Seq C1 exon
CAAAACAGAAGCAGAAAGTG
Seq A exon
GTAAGTTGTGTTTCCTTTTTAAACTCCTGCTAAGGTTCCTATCCGTCCATGCCTGTGGATGTTGCATTTCCGAGACCCACATAGCTATAAAGTGAGGGACGGACCTCGTCAGTGGGGACCCTTAGTAGTGACTTACTGAGAATTCCAGATGTTGTGGATGTCGAGAAGAGAGACTCGAATTTACCTTCTCACTCATGTTGACTCGTCTTTTTCAG
Seq C2 exon
ACAGAGCACATTCCTCCGTATGATGTTGTGCCATCAATGCGTCCTGTGGTGTTAGTGGGGCCATCACTGAAAGGTTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007666:ENSRNOT00000059430:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]