MmuEX0008835 @ mm10
Exon Skipping
Gene
ENSMUSG00000020882 | Cacnb1
Description
calcium channel, voltage-dependent, beta 1 subunit [Source:MGI Symbol;Acc:MGI:102522]
Coordinates
chr11:98010296-98011942:-
Coord C1 exon
chr11:98011866-98011942
Coord A exon
chr11:98010627-98010646
Coord C2 exon
chr11:98010296-98010376
Length
20 bp
Sequences
Splice sites
3' ss Seq
CTGGCAATCTCTGGACCCAGCCA
3' ss Score
1.93
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
Exon sequences
Seq C1 exon
CAAGTCAGGTGACAACTCCAGTTCCAGTCTGGGAGATGTGGTGACTGGCACCCGCCGCCCCACACCCCCTGCCAGTG
Seq A exon
CCAAACAGAAGCAGAAATCG
Seq C2 exon
ACAGAGCACGTGCCCCCCTATGACGTGGTGCCTTCCATGAGGCCCATCATCCTGGTGGGACCGTCGCTCAAGGGCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020882-'22-14,'22-13,24-14
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.117
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGAGATGTGGTGACTGG
R:
AGGATGATGGGCCTCATGGAA
Band lengths:
103-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types