BtaEX0006802 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002036 | CACNB1
Description
Bos taurus calcium channel, voltage-dependent, beta 1 subunit (CACNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_175819]
Coordinates
chr19:40303412-40305218:+
Coord C1 exon
chr19:40303412-40303488
Coord A exon
chr19:40304861-40304881
Coord C2 exon
chr19:40305138-40305218
Length
21 bp
Sequences
Splice sites
3' ss Seq
TTGGCAATCTCTGGACCCAGCCA
3' ss Score
1.4
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
CAAATCAGGTGACAACTCCAGCTCCAGCCTGGGAGACGTGGTGACTGGCACCCGCCGCCCCACGCCCCCTGCCAGTG
Seq A exon
CCAAACAGAAGCAGAAGTCGG
Seq C2 exon
ACAGAACACGTGCCCCCTTATGACGTGGTACCTTCCATGAGGCCCATTATCCTGGTGGGACCGTCGCTGAAGGGCTATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002036_MULTIEX1-3/3=C1-C2
Average complexity
ME(2-3[98=100])
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.213
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(8.3=55.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGTGACAACTCCAGCTCC
R:
AGGTACCACGTCATAAGGGGG
Band lengths:
106-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development