BtaEX0006800 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002036 | CACNB1
Description
Bos taurus calcium channel, voltage-dependent, beta 1 subunit (CACNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_175819]
Coordinates
chr19:40303412-40304880:+
Coord C1 exon
chr19:40303412-40303488
Coord A exon
chr19:40303575-40303659
Coord C2 exon
chr19:40304861-40304880
Length
85 bp
Sequences
Splice sites
3' ss Seq
GTCCCTTCCTTTCCCTGCAGTAA
3' ss Score
10.6
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
Exon sequences
Seq C1 exon
CAAATCAGGTGACAACTCCAGCTCCAGCCTGGGAGACGTGGTGACTGGCACCCGCCGCCCCACGCCCCCTGCCAGTG
Seq A exon
TAAGGGGTATCCCAATCCTGAGTCCTCCAAACACATCCAGCGGTACCCCCTCCATGAAGAGCAGGGCACCCCCCAAGCTGGGCTG
Seq C2 exon
CCAAACAGAAGCAGAAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002036_MULTIEX1-1/3=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000043189fB1284
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAGGTGACAACTCCAGCT
R:
CGACTTCTGCTTCTGTTTGG
Band lengths:
95-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development