RnoINT0028226 @ rn6
Intron Retention
Gene
ENSRNOG00000004518 | Cacnb1
Description
calcium voltage-gated channel auxiliary subunit beta 1 [Source:RGD Symbol;Acc:68382]
Coordinates
chr10:85963471-85964802:-
Coord C1 exon
chr10:85964726-85964802
Coord A exon
chr10:85963491-85964725
Coord C2 exon
chr10:85963471-85963490
Length
1235 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
CTGGCAATCTCTGGACCCAGCCA
3' ss Score
1.93
Exon sequences
Seq C1 exon
CAAGTCAGGTGACAACTCCAGTTCCAGTCTGGGAGATGTGGTGACTGGCACCCGCCGCCCCACACCCCCCGCCAGTG
Seq A exon
GTAAGAGCTGCCTGCAACCCAGGGGAGGGAGAGTTTTTCCTGGGTGGGGTGGTCTCTCCACAGGGGTGGTCCCTCCTCCCTGTGATAGGAGGTACCCCAATTCTGAGTCCCCCAAACACACGCAGTAGTACCGCTCCGTTAAGGATAGGCTATCTTCCGAGCTGAGTCTGTCACGTCTCTCCTGTCCCTTTCTGTGGTAGCTCCATCTCTCTGCCTTCCCCCATACCCCCATCTCCCATCCATTCTCCTAGCCCCGTTCCATTCACTTCTTCTTTCTTTCTCCCCCATCCCATCCTTGTGTTCTACGCTGTGTCTCGTGCTCATCTCCCTCTTCCTCTCCCTTCACCTCCTTCCTGACTGGTCCAGGTAACGAAATGACTAACTTTGCCTTTGAGCTAGACCCCCTAGAGTTAGAGGAGGAGGAGGCGGAGCTAGGGGAGCACGGTGGCTCTGCCAAGACTAGTGTGAGCAGTGTCACCACGCCGCCACCCCACGGCAAGCGCATCCCCTTTTTTAAGAAGGTAATTCCGTCTGGTTTCCTGTCAAGACCCAGCTCTTGGCAAAGAAGAGGCTGCAGTAGTACAGATGTGGTTCATTCTCTGCTTCAAGTCTCTGGGCTTTCTGTCTAGCTGGATGTACGGGGCTGGGCTGGGCTGGGGACACACCTCTCTTCATTAAACTCCACTCCTTGCCTCTCAGGAAGAGGCAGCTCTTGCTTTGTCTAGTAATAAACACATCCAGTTTGGTCCTTGTGGCTAATATATGCCCTGCTCTGGATTGAAGAGAATGGAATAGCATTCATTTGTCCCTTTCCAACTCTGAGTAGATGTGTGAGGGGCTCTATTAAATGCAGAACAGGTCCTCAAGGGAACCCTTAAAATATATAGGCAGATACACACTGGGGCAAAGTGTGGGCCCTGGGTTAGGGGCATCCAGTGTTTCTAGCTCTTTTCAGAGCTAGTAGGAGGGCAGGAGGCCTGACCCACTATTCTCAAATCCACTGGATGACTGTCCGTCCTGCCTCCAGCCTCCAAGGCCACCTTTGCTCCCCTGTGGCACGGGGTCCCATACCTTCTCTGGCTCTGTCTGTCACTAACACGCATGCCTGTTATTTTTCCTCGTCTACCTGCTCTCTTGCCCCTTCTCCTGTCCTGGCTCCTTCCTGGCCCTCTACCCCTGCCTGGTGCCTTCCCCTCTCTCCCTCCCTTCCCCATCCTGGCAATCTCTGGACCCAG
Seq C2 exon
CCAAACAGAAGCAGAAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004518:ENSRNOT00000006098:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]