Special

HsaINT1006208 @ hg38

Intron Retention

Gene
ENSG00000067191 | CACNB1
Description
calcium voltage-gated channel auxiliary subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:1401]
Coordinates
chr17:39185131-39186572:-
Coord C1 exon
chr17:39186496-39186572
Coord A exon
chr17:39185151-39186495
Coord C2 exon
chr17:39185131-39185150
Length
1345 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
TTGGCAATCTCTGGACCCAGCCA
3' ss Score
1.4
Exon sequences
Seq C1 exon
CAAATCAGGCGATAACTCCAGTTCCAGTCTGGGAGATGTGGTGACTGGCACCCGCCGCCCCACACCCCCTGCCAGTG
Seq A exon
GTAAGAGCCATCGCCATGCAGGGGTTTGGGAAGAAGCTCCTGGGTGGGGTGGTCTCCCCACTCCCTGAATCCTCCTTTCCCTGCAGTAGGAAACACCCCAATCCTGAGTCCCCCAAGCACATGCAGTGGTTCCCCCTCCATGAAGAGTAGGCTACCCCTCAAGCTGGGCCTGTCATGTCTCTCCTCTCCCTTTTCTTTGGTAGCTCCATCTCTCTGCCTGATTCCCCTGCCCTGCCCCCATTCATTTCTCCCAGCCCTGTTCCATTCACCTCTTCTTCTTTCTTTTTTCCCCATCCCCATCCCTGCGTTCTGTACTTGTGTCTCCACGTTCATCTCACTCCTTCTCCCCACCTCGCCTCCCTCCTCCCTCTCTCCTGACTCTCCGGTCCAGGTAATGAAATGACTAACTTAGCCTTTGAACTAGACCCCCTAGAGTTAGAGGAGGAAGAGGCTGAGCTTGGTGAGCAGAGTGGCTCTGCCAAGACTAGTGTTAGCAGTGTCACCACCCCGCCACCCCATGGCAAACGCATCCCCTTCTTTAAGAAGGTAATTCTCGCTGTGTTCTTGCAAGAGGTGGGGGAGTCAGGGCCAGCACTTTGGTGGAGGGAAGGGGGCTGTAATGGATTCAGATGTGGTACCAACCTGTTCTGTGGGCATCAGGGCTTCCTGCTGAGGTGGAGGGAAGGGTAGCATGGGCACATCCCCCTCCACACACAACTCCACCCTGGCCCGATCTCCAGGAAGGAGATCTTGCCCTTGGAAGGTTGCCCCCACACCTGGGGCAGCAGGGTTTGGTGGTCATGAACCCTGACCTCTCCCCTCACTCCCAGGGGCCTGCTCTGGTGTTGGTGTCTACCTTGGCATGTGAAGCAGGACATGGGATGGCATTCCTTCTTTGCCCTTTTTTGACTCTCTGGGTGGGCACATAGTGGGGGGGGGCTGCTGGCTGCAAAGCAAGACAGTTAAGGGAACCCCTAAAATGGGCATGTTGGCATGCACTGGGGGCAGGAGATGGGCAACAAGATAGGGGCTGTCACCCTCTCCAGCTCTTTTCCAAGACCCAGAAGAGGGTAGGATATGTCTGAATATTCCCACATCCACTGGACTGACTGTCAGTCCTGCTCCCAGCCCTGATCCAGGGCCACCTCTGGCTCCCCCTTGGCGTGGGGTCCCGTTCCCCGTCTCTGGCTCTGTCTGTCACTAACACGCATGCCCTGTTATCTCTCCTCGTCTGCCCGGCTCTCCCTCCCTCTCTTGTCCTGGCTCCTGCCTTGCCCTCTGCCCCTGCCTGGGTCCCCTTCCCTCTCTCCTCCCCCTTCCCTCTCTTGGCAATCTCTGGACCCAG
Seq C2 exon
CCAAACAGAAGCAGAAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000067191:ENST00000394303:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains