MmuEX6100986 @ mm9
Exon Skipping
Gene
ENSMUSG00000062997 | Rpl35
Description
ribosomal protein L35 [Source:MGI Symbol;Acc:MGI:1913739]
Coordinates
chr2:38857100-38860388:-
Coord C1 exon
chr2:38860252-38860388
Coord A exon
chr2:38859627-38859708
Coord C2 exon
chr2:38857100-38857285
Length
82 bp
Sequences
Splice sites
3' ss Seq
ACTGCCATCTATTTTTATAGACG
3' ss Score
7.41
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCCAAGATTAAGGCTCGGGACCTGCGCGGCAAGAAGAAGGAGGAGCTGTTGAAACAACTGGACGATCTGAAGGTGGAATTGTCCCAGCTTCGGGTCGCCAAAGTGACAGGCGGCGCCGCGTCCAAGCTCTCCAAGAT
Seq A exon
ACGAGTCGTTCGCAAGTCTATCGCCCGAGTCCTCACTGTTATTAACCAGACTCAAAAAGAAAACCTCAGGAAATTCTACAAG
Seq C2 exon
GGCAAGAAATACAAGCCCCTAGACCTGCGACCCAAGAAGACTAGAGCCATGCGCCGCCGGCTCACCAAGCACGAGGAGAAGCTGAAGACCAAGAAGCAGCAGCGGAAGGAGCGGCTGTATCCTCTGCGCAAGTATGCAGTCAAGGCCTGAGATGACAACGACAATAAAGTGCGAGACTGACTGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062997-'4-8,'4-4,7-8=AN
Average complexity
A_C2
Mappability confidence:
100%=83=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.036 C2=0.633
Domain overlap (PFAM):
C1:
PF0083118=Ribosomal_L29=PU(69.5=89.1)
A:
PF0083118=Ribosomal_L29=PD(28.8=60.7),PF093645=XFP_N=PU(33.8=78.6)
C2:
PF093645=XFP_N=PD(63.1=82.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGACGATCTGAAGGTGGA
R:
GTCTTCAGCTTCTCCTCGTGC
Band lengths:
170-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: