DreEX0063083 @ danRer10
Exon Skipping
Gene
ENSDARG00000018334 | rpl35
Description
ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
Coordinates
chr21:5766296-5772980:-
Coord C1 exon
chr21:5772844-5772980
Coord A exon
chr21:5768827-5768908
Coord C2 exon
chr21:5766296-5766514
Length
82 bp
Sequences
Splice sites
3' ss Seq
CATTTGTGTTCTCTTTTTAGCCG
3' ss Score
9.19
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCAAAGATCAAGGCCAGAGACCTTCGCGGAAAGAAAAAGGAGGAGCTGCTGAAACAGCTGGATGATCTGAAGGTGGAACTTTCCCAGCTCCGCGTTGCCAAGGTTACCGGTGGAGCTGCTTCCAAGCTCTCAAAAAT
Seq A exon
CCGTGTTGTCCGCAAGTCCATCGCCAGAGTCCTCACAGTCATCAACCAGACACAGAAGGAGAACTTGAGGAAGTTTTACAAG
Seq C2 exon
GGTAAGAAGTACAAGCCTTTGGACCTGAGACCCAAGAAGACCCGTGCCATCCGTCGTCAGCTCACAAAACACGAAGAGAACCTGATGACTAAGAAGATGCAGAGGAAATCTCGTCTCTACTCCATTCGCAAGTTCGCCGTCAAGGCATAAAAAAAGCTGTACTTTTGTTTTTCCACTGAAAAATAAAATCCCCCGCTCACCCTGGAGTCAAGATGTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018334-'9-7,'9-5,14-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.036 C2=0.551
Domain overlap (PFAM):
C1:
PF0083118=Ribosomal_L29=PU(69.5=89.1)
A:
PF0083118=Ribosomal_L29=PD(28.8=60.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAAGGCCAGAGACCTTCG
R:
GGGTCTTCTTGGGTCTCAGGT
Band lengths:
175-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]